Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC26.43■■□□□ 1.82
USP42Q9H9J4 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
USP42Q9H9J4 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
USP42Q9H9J4 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
USP42Q9H9J4 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
USP42Q9H9J4 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
USP42Q9H9J4 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC26.43■■□□□ 1.82
USP42Q9H9J4 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
USP42Q9H9J4 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
USP42Q9H9J4 ECEL1P3-201ENST00000427961 737 ntBASIC26.42■■□□□ 1.82
USP42Q9H9J4 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC26.42■■□□□ 1.82
USP42Q9H9J4 SNORA78-201ENST00000459373 127 ntBASIC26.42■■□□□ 1.82
USP42Q9H9J4 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
USP42Q9H9J4 SOX15-203ENST00000570788 1093 ntBASIC26.42■■□□□ 1.82
USP42Q9H9J4 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
USP42Q9H9J4 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
USP42Q9H9J4 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
USP42Q9H9J4 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
USP42Q9H9J4 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
USP42Q9H9J4 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
USP42Q9H9J4 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
USP42Q9H9J4 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
USP42Q9H9J4 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
USP42Q9H9J4 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
USP42Q9H9J4 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
USP42Q9H9J4 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
USP42Q9H9J4 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
USP42Q9H9J4 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
USP42Q9H9J4 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
USP42Q9H9J4 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
USP42Q9H9J4 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
USP42Q9H9J4 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
USP42Q9H9J4 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC26.41■■□□□ 1.82
USP42Q9H9J4 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC26.41■■□□□ 1.82
USP42Q9H9J4 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC26.41■■□□□ 1.82
USP42Q9H9J4 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC26.41■■□□□ 1.82
USP42Q9H9J4 SPIB-206ENST00000596074 847 ntTSL 2 BASIC26.41■■□□□ 1.82
USP42Q9H9J4 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
USP42Q9H9J4 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC26.41■■□□□ 1.82
USP42Q9H9J4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
USP42Q9H9J4 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
USP42Q9H9J4 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
USP42Q9H9J4 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
USP42Q9H9J4 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
USP42Q9H9J4 C11orf96-202ENST00000528572 1834 ntBASIC26.41■■□□□ 1.82
USP42Q9H9J4 KRT18P68-201ENST00000392293 1000 ntBASIC26.4■■□□□ 1.82
USP42Q9H9J4 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC26.4■■□□□ 1.82
USP42Q9H9J4 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
USP42Q9H9J4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC26.4■■□□□ 1.82
USP42Q9H9J4 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC26.4■■□□□ 1.82
USP42Q9H9J4 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC26.4■■□□□ 1.82
USP42Q9H9J4 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
USP42Q9H9J4 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC26.4■■□□□ 1.82
USP42Q9H9J4 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
USP42Q9H9J4 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
USP42Q9H9J4 GCK-205ENST00000437084 1385 ntTSL 5 BASIC26.4■■□□□ 1.82
USP42Q9H9J4 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
USP42Q9H9J4 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
USP42Q9H9J4 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
USP42Q9H9J4 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC26.4■■□□□ 1.82
USP42Q9H9J4 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC26.4■■□□□ 1.82
USP42Q9H9J4 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
USP42Q9H9J4 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
USP42Q9H9J4 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
USP42Q9H9J4 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
USP42Q9H9J4 MFF-205ENST00000354503 1085 ntTSL 2 BASIC26.39■■□□□ 1.82
USP42Q9H9J4 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC26.39■■□□□ 1.82
USP42Q9H9J4 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC26.39■■□□□ 1.82
USP42Q9H9J4 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
USP42Q9H9J4 OR2A1-AS1-207ENST00000486094 819 ntBASIC26.39■■□□□ 1.82
USP42Q9H9J4 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC26.39■■□□□ 1.82
USP42Q9H9J4 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
USP42Q9H9J4 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
USP42Q9H9J4 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC26.39■■□□□ 1.81
USP42Q9H9J4 SAPCD2P1-201ENST00000395413 1184 ntBASIC26.39■■□□□ 1.81
USP42Q9H9J4 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
USP42Q9H9J4 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.81
USP42Q9H9J4 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC26.39■■□□□ 1.81
USP42Q9H9J4 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
USP42Q9H9J4 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP42Q9H9J4 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP42Q9H9J4 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP42Q9H9J4 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP42Q9H9J4 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
USP42Q9H9J4 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC26.38■■□□□ 1.81
USP42Q9H9J4 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP42Q9H9J4 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP42Q9H9J4 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC26.38■■□□□ 1.81
USP42Q9H9J4 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP42Q9H9J4 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP42Q9H9J4 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP42Q9H9J4 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP42Q9H9J4 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP42Q9H9J4 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
USP42Q9H9J4 KLF2-202ENST00000592003 564 ntTSL 3 BASIC26.38■■□□□ 1.81
USP42Q9H9J4 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC26.37■■□□□ 1.81
USP42Q9H9J4 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC26.37■■□□□ 1.81
USP42Q9H9J4 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC26.37■■□□□ 1.81
USP42Q9H9J4 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP42Q9H9J4 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC26.37■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms