Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL12A1Q99715 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL12A1Q99715 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL12A1Q99715 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.28■□□□□ 0.52
COL12A1Q99715 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.28■□□□□ 0.52
COL12A1Q99715 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
COL12A1Q99715 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL12A1Q99715 NUDT16P1-203ENST00000513809 620 ntBASIC18.27■□□□□ 0.52
COL12A1Q99715 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
COL12A1Q99715 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.27■□□□□ 0.52
COL12A1Q99715 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL12A1Q99715 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
COL12A1Q99715 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.27■□□□□ 0.52
COL12A1Q99715 BX664615.1-201ENST00000443558 458 ntBASIC18.27■□□□□ 0.52
COL12A1Q99715 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL12A1Q99715 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL12A1Q99715 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
COL12A1Q99715 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
COL12A1Q99715 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.27■□□□□ 0.51
COL12A1Q99715 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL12A1Q99715 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18.26■□□□□ 0.51
COL12A1Q99715 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL12A1Q99715 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL12A1Q99715 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL12A1Q99715 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL12A1Q99715 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL12A1Q99715 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL12A1Q99715 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL12A1Q99715 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL12A1Q99715 KRT18P48-201ENST00000434763 852 ntBASIC18.26■□□□□ 0.51
COL12A1Q99715 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL12A1Q99715 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
COL12A1Q99715 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.26■□□□□ 0.51
COL12A1Q99715 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.26■□□□□ 0.51
COL12A1Q99715 AC010947.1-201ENST00000623454 693 ntBASIC18.26■□□□□ 0.51
COL12A1Q99715 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC18.26■□□□□ 0.51
COL12A1Q99715 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.26■□□□□ 0.51
COL12A1Q99715 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.26■□□□□ 0.51
COL12A1Q99715 AC087633.2-202ENST00000565166 1439 ntBASIC18.26■□□□□ 0.51
COL12A1Q99715 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL12A1Q99715 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL12A1Q99715 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC18.25■□□□□ 0.51
COL12A1Q99715 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL12A1Q99715 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL12A1Q99715 AL034346.1-201ENST00000568244 1277 ntBASIC18.25■□□□□ 0.51
COL12A1Q99715 AC243732.1-201ENST00000612648 864 ntBASIC18.25■□□□□ 0.51
COL12A1Q99715 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC18.25■□□□□ 0.51
COL12A1Q99715 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL12A1Q99715 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL12A1Q99715 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.25■□□□□ 0.51
COL12A1Q99715 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.25■□□□□ 0.51
COL12A1Q99715 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.25■□□□□ 0.51
COL12A1Q99715 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL12A1Q99715 AC079598.2-202ENST00000546624 1451 ntBASIC18.25■□□□□ 0.51
COL12A1Q99715 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL12A1Q99715 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL12A1Q99715 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.24■□□□□ 0.51
COL12A1Q99715 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
COL12A1Q99715 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL12A1Q99715 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC18.24■□□□□ 0.51
COL12A1Q99715 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL12A1Q99715 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.24■□□□□ 0.51
COL12A1Q99715 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.24■□□□□ 0.51
COL12A1Q99715 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.24■□□□□ 0.51
COL12A1Q99715 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.24■□□□□ 0.51
COL12A1Q99715 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.24■□□□□ 0.51
COL12A1Q99715 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.24■□□□□ 0.51
COL12A1Q99715 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL12A1Q99715 AC020928.2-201ENST00000588717 2197 ntBASIC18.24■□□□□ 0.51
COL12A1Q99715 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL12A1Q99715 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC18.24■□□□□ 0.51
COL12A1Q99715 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
COL12A1Q99715 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL12A1Q99715 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL12A1Q99715 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.24■□□□□ 0.51
COL12A1Q99715 AL031963.3-201ENST00000606441 850 ntBASIC18.24■□□□□ 0.51
COL12A1Q99715 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL12A1Q99715 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
COL12A1Q99715 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.23■□□□□ 0.51
COL12A1Q99715 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL12A1Q99715 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL12A1Q99715 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL12A1Q99715 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL12A1Q99715 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL12A1Q99715 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.23■□□□□ 0.51
COL12A1Q99715 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.23■□□□□ 0.51
COL12A1Q99715 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL12A1Q99715 RBM17P1-201ENST00000453646 1190 ntBASIC18.23■□□□□ 0.51
COL12A1Q99715 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
COL12A1Q99715 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL12A1Q99715 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL12A1Q99715 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL12A1Q99715 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.23■□□□□ 0.51
COL12A1Q99715 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL12A1Q99715 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL12A1Q99715 AC027702.1-201ENST00000563810 1770 ntBASIC18.23■□□□□ 0.51
COL12A1Q99715 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL12A1Q99715 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.23■□□□□ 0.51
COL12A1Q99715 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.23■□□□□ 0.51
COL12A1Q99715 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms