Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC24.75■■□□□ 1.55
SMC1BQ8NDV3 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 AC105020.6-201ENST00000621523 1217 ntBASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 AL139125.2-201ENST00000623134 1869 ntBASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SMC1BQ8NDV3 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.73■■□□□ 1.55
SMC1BQ8NDV3 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SMC1BQ8NDV3 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC24.73■■□□□ 1.55
SMC1BQ8NDV3 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SMC1BQ8NDV3 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SMC1BQ8NDV3 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SMC1BQ8NDV3 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SMC1BQ8NDV3 SAPCD2P1-201ENST00000395413 1184 ntBASIC24.73■■□□□ 1.55
SMC1BQ8NDV3 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SMC1BQ8NDV3 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SMC1BQ8NDV3 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SMC1BQ8NDV3 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SMC1BQ8NDV3 WWOX-216ENST00000569818 525 ntBASIC24.73■■□□□ 1.55
SMC1BQ8NDV3 AC091076.1-201ENST00000610741 619 ntBASIC24.73■■□□□ 1.55
SMC1BQ8NDV3 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SMC1BQ8NDV3 AC079598.2-202ENST00000546624 1451 ntBASIC24.72■■□□□ 1.55
SMC1BQ8NDV3 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SMC1BQ8NDV3 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SMC1BQ8NDV3 UNC93B2-201ENST00000285383 730 ntBASIC24.72■■□□□ 1.55
SMC1BQ8NDV3 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
SMC1BQ8NDV3 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
SMC1BQ8NDV3 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC24.72■■□□□ 1.55
SMC1BQ8NDV3 KRT18P56-201ENST00000507275 550 ntBASIC24.72■■□□□ 1.55
SMC1BQ8NDV3 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC24.72■■□□□ 1.55
SMC1BQ8NDV3 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC24.72■■□□□ 1.55
SMC1BQ8NDV3 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC24.72■■□□□ 1.55
SMC1BQ8NDV3 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
SMC1BQ8NDV3 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC24.72■■□□□ 1.55
SMC1BQ8NDV3 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SMC1BQ8NDV3 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
SMC1BQ8NDV3 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
SMC1BQ8NDV3 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
SMC1BQ8NDV3 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
SMC1BQ8NDV3 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC24.71■■□□□ 1.55
SMC1BQ8NDV3 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
SMC1BQ8NDV3 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC24.71■■□□□ 1.55
SMC1BQ8NDV3 AC026396.1-201ENST00000419388 421 ntBASIC24.71■■□□□ 1.55
SMC1BQ8NDV3 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC24.71■■□□□ 1.55
SMC1BQ8NDV3 SLC25A3P1-201ENST00000443844 931 ntBASIC24.71■■□□□ 1.55
SMC1BQ8NDV3 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
SMC1BQ8NDV3 NAPSB-206ENST00000562112 1266 ntBASIC24.71■■□□□ 1.55
SMC1BQ8NDV3 AP000525.1-201ENST00000608286 694 ntBASIC24.71■■□□□ 1.55
SMC1BQ8NDV3 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC24.7■■□□□ 1.55
SMC1BQ8NDV3 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
SMC1BQ8NDV3 AC087633.2-202ENST00000565166 1439 ntBASIC24.7■■□□□ 1.55
SMC1BQ8NDV3 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
SMC1BQ8NDV3 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.7■■□□□ 1.55
SMC1BQ8NDV3 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
SMC1BQ8NDV3 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
SMC1BQ8NDV3 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
SMC1BQ8NDV3 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC24.7■■□□□ 1.54
SMC1BQ8NDV3 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
SMC1BQ8NDV3 FAM197Y1-201ENST00000421178 764 ntBASIC24.7■■□□□ 1.54
SMC1BQ8NDV3 AL353807.1-201ENST00000427475 662 ntBASIC24.7■■□□□ 1.54
SMC1BQ8NDV3 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC24.7■■□□□ 1.54
SMC1BQ8NDV3 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC24.7■■□□□ 1.54
SMC1BQ8NDV3 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
SMC1BQ8NDV3 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 SRI-203ENST00000419179 1307 ntTSL 2 BASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 HTR7P1-201ENST00000538670 1336 ntBASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 MIR1238-201ENST00000408483 83 ntBASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 AL031963.3-201ENST00000606441 850 ntBASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC24.69■■□□□ 1.54
SMC1BQ8NDV3 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
SMC1BQ8NDV3 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
SMC1BQ8NDV3 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC24.68■■□□□ 1.54
SMC1BQ8NDV3 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms