Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.77■□□□□ 0.43
USF3Q68DE3 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
USF3Q68DE3 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.77■□□□□ 0.43
USF3Q68DE3 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC17.76■□□□□ 0.43
USF3Q68DE3 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USF3Q68DE3 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
USF3Q68DE3 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
USF3Q68DE3 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.76■□□□□ 0.43
USF3Q68DE3 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
USF3Q68DE3 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USF3Q68DE3 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC17.76■□□□□ 0.43
USF3Q68DE3 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.76■□□□□ 0.43
USF3Q68DE3 AC026471.6-201ENST00000622954 1905 ntBASIC17.76■□□□□ 0.43
USF3Q68DE3 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
USF3Q68DE3 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USF3Q68DE3 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USF3Q68DE3 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
USF3Q68DE3 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.76■□□□□ 0.43
USF3Q68DE3 AC128676.1-201ENST00000454392 318 ntBASIC17.76■□□□□ 0.43
USF3Q68DE3 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.76■□□□□ 0.43
USF3Q68DE3 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USF3Q68DE3 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC17.76■□□□□ 0.43
USF3Q68DE3 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USF3Q68DE3 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC17.76■□□□□ 0.43
USF3Q68DE3 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USF3Q68DE3 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.76■□□□□ 0.43
USF3Q68DE3 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
USF3Q68DE3 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USF3Q68DE3 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USF3Q68DE3 AC026366.1-201ENST00000488803 879 ntBASIC17.75■□□□□ 0.43
USF3Q68DE3 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
USF3Q68DE3 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USF3Q68DE3 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USF3Q68DE3 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USF3Q68DE3 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
USF3Q68DE3 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USF3Q68DE3 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
USF3Q68DE3 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USF3Q68DE3 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USF3Q68DE3 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.75■□□□□ 0.43
USF3Q68DE3 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.75■□□□□ 0.43
USF3Q68DE3 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.75■□□□□ 0.43
USF3Q68DE3 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.75■□□□□ 0.43
USF3Q68DE3 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
USF3Q68DE3 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC17.74■□□□□ 0.43
USF3Q68DE3 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USF3Q68DE3 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USF3Q68DE3 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USF3Q68DE3 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USF3Q68DE3 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
USF3Q68DE3 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USF3Q68DE3 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
USF3Q68DE3 AP003097.1-201ENST00000530657 1135 ntBASIC17.74■□□□□ 0.43
USF3Q68DE3 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.74■□□□□ 0.43
USF3Q68DE3 KRT17P1-201ENST00000399211 1546 ntBASIC17.74■□□□□ 0.43
USF3Q68DE3 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
USF3Q68DE3 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.74■□□□□ 0.43
USF3Q68DE3 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC17.74■□□□□ 0.43
USF3Q68DE3 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
USF3Q68DE3 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
USF3Q68DE3 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USF3Q68DE3 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.74■□□□□ 0.43
USF3Q68DE3 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.74■□□□□ 0.43
USF3Q68DE3 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.74■□□□□ 0.43
USF3Q68DE3 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.74■□□□□ 0.43
USF3Q68DE3 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.74■□□□□ 0.43
USF3Q68DE3 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.74■□□□□ 0.43
USF3Q68DE3 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
USF3Q68DE3 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.73■□□□□ 0.43
USF3Q68DE3 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF3Q68DE3 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.73■□□□□ 0.43
USF3Q68DE3 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USF3Q68DE3 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.73■□□□□ 0.43
USF3Q68DE3 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USF3Q68DE3 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
USF3Q68DE3 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF3Q68DE3 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.73■□□□□ 0.43
USF3Q68DE3 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.73■□□□□ 0.43
USF3Q68DE3 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.73■□□□□ 0.43
USF3Q68DE3 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF3Q68DE3 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF3Q68DE3 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC17.73■□□□□ 0.43
USF3Q68DE3 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF3Q68DE3 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.73■□□□□ 0.43
USF3Q68DE3 ME2-206ENST00000638410 2289 ntTSL 5 BASIC17.72■□□□□ 0.43
USF3Q68DE3 ME2-210ENST00000639255 2262 ntTSL 5 BASIC17.72■□□□□ 0.43
USF3Q68DE3 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USF3Q68DE3 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USF3Q68DE3 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
USF3Q68DE3 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.72■□□□□ 0.43
USF3Q68DE3 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USF3Q68DE3 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
USF3Q68DE3 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USF3Q68DE3 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
USF3Q68DE3 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USF3Q68DE3 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.72■□□□□ 0.43
USF3Q68DE3 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC17.72■□□□□ 0.43
USF3Q68DE3 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC17.72■□□□□ 0.43
USF3Q68DE3 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.72■□□□□ 0.43
USF3Q68DE3 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms