Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.17■□□□□ 0.82
YBX1P67809 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
YBX1P67809 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
YBX1P67809 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
YBX1P67809 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
YBX1P67809 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.17■□□□□ 0.82
YBX1P67809 POU5F1P4-201ENST00000413175 1085 ntBASIC20.17■□□□□ 0.82
YBX1P67809 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
YBX1P67809 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
YBX1P67809 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.17■□□□□ 0.82
YBX1P67809 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
YBX1P67809 MYCNOS-205ENST00000641950 531 ntBASIC20.17■□□□□ 0.82
YBX1P67809 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
YBX1P67809 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
YBX1P67809 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
YBX1P67809 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
YBX1P67809 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.17■□□□□ 0.82
YBX1P67809 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
YBX1P67809 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
YBX1P67809 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.16■□□□□ 0.82
YBX1P67809 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.16■□□□□ 0.82
YBX1P67809 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
YBX1P67809 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
YBX1P67809 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
YBX1P67809 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
YBX1P67809 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.16■□□□□ 0.82
YBX1P67809 KRT18P20-201ENST00000548986 1279 ntBASIC20.16■□□□□ 0.82
YBX1P67809 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
YBX1P67809 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.16■□□□□ 0.82
YBX1P67809 MFSD11-216ENST00000590393 1141 ntBASIC20.16■□□□□ 0.82
YBX1P67809 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.16■□□□□ 0.82
YBX1P67809 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
YBX1P67809 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
YBX1P67809 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
YBX1P67809 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
YBX1P67809 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
YBX1P67809 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
YBX1P67809 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
YBX1P67809 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
YBX1P67809 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.15■□□□□ 0.82
YBX1P67809 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
YBX1P67809 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
YBX1P67809 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
YBX1P67809 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
YBX1P67809 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
YBX1P67809 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
YBX1P67809 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.15■□□□□ 0.82
YBX1P67809 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.15■□□□□ 0.82
YBX1P67809 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
YBX1P67809 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
YBX1P67809 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
YBX1P67809 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.15■□□□□ 0.82
YBX1P67809 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.15■□□□□ 0.82
YBX1P67809 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
YBX1P67809 AL049796.1-201ENST00000565336 1766 ntBASIC20.15■□□□□ 0.82
YBX1P67809 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.15■□□□□ 0.82
YBX1P67809 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
YBX1P67809 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
YBX1P67809 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
YBX1P67809 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.14■□□□□ 0.81
YBX1P67809 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
YBX1P67809 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
YBX1P67809 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
YBX1P67809 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
YBX1P67809 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
YBX1P67809 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.14■□□□□ 0.81
YBX1P67809 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.14■□□□□ 0.81
YBX1P67809 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.14■□□□□ 0.81
YBX1P67809 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.14■□□□□ 0.81
YBX1P67809 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
YBX1P67809 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
YBX1P67809 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
YBX1P67809 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
YBX1P67809 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
YBX1P67809 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.13■□□□□ 0.81
YBX1P67809 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
YBX1P67809 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.13■□□□□ 0.81
YBX1P67809 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
YBX1P67809 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
YBX1P67809 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
YBX1P67809 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
YBX1P67809 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.13■□□□□ 0.81
YBX1P67809 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
YBX1P67809 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.13■□□□□ 0.81
YBX1P67809 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.13■□□□□ 0.81
YBX1P67809 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
YBX1P67809 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
YBX1P67809 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.13■□□□□ 0.81
YBX1P67809 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
YBX1P67809 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.12■□□□□ 0.81
YBX1P67809 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
YBX1P67809 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
YBX1P67809 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
YBX1P67809 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
YBX1P67809 KRT16P2-201ENST00000414673 1423 ntBASIC20.12■□□□□ 0.81
YBX1P67809 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
YBX1P67809 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
YBX1P67809 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
YBX1P67809 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.12■□□□□ 0.81
YBX1P67809 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms