Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SUMO3P55854 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SUMO3P55854 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SUMO3P55854 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SUMO3P55854 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SUMO3P55854 AC006128.1-201ENST00000624704 1661 ntBASIC18.76■□□□□ 0.59
SUMO3P55854 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.76■□□□□ 0.59
SUMO3P55854 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SUMO3P55854 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SUMO3P55854 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.75■□□□□ 0.59
SUMO3P55854 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
SUMO3P55854 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
SUMO3P55854 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
SUMO3P55854 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.75■□□□□ 0.59
SUMO3P55854 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SUMO3P55854 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SUMO3P55854 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SUMO3P55854 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.75■□□□□ 0.59
SUMO3P55854 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.75■□□□□ 0.59
SUMO3P55854 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SUMO3P55854 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.75■□□□□ 0.59
SUMO3P55854 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SUMO3P55854 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.75■□□□□ 0.59
SUMO3P55854 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.75■□□□□ 0.59
SUMO3P55854 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.75■□□□□ 0.59
SUMO3P55854 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.75■□□□□ 0.59
SUMO3P55854 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
SUMO3P55854 AL137060.1-201ENST00000618151 2648 ntBASIC18.75■□□□□ 0.59
SUMO3P55854 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.75■□□□□ 0.59
SUMO3P55854 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SUMO3P55854 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.75■□□□□ 0.59
SUMO3P55854 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SUMO3P55854 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.75■□□□□ 0.59
SUMO3P55854 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SUMO3P55854 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SUMO3P55854 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SUMO3P55854 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.74■□□□□ 0.59
SUMO3P55854 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SUMO3P55854 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SUMO3P55854 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SUMO3P55854 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SUMO3P55854 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SUMO3P55854 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SUMO3P55854 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SUMO3P55854 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SUMO3P55854 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.74■□□□□ 0.59
SUMO3P55854 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SUMO3P55854 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.74■□□□□ 0.59
SUMO3P55854 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.74■□□□□ 0.59
SUMO3P55854 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SUMO3P55854 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
SUMO3P55854 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SUMO3P55854 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SUMO3P55854 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.74■□□□□ 0.59
SUMO3P55854 AC007322.1-201ENST00000426983 750 ntBASIC18.74■□□□□ 0.59
SUMO3P55854 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.74■□□□□ 0.59
SUMO3P55854 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.74■□□□□ 0.59
SUMO3P55854 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SUMO3P55854 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SUMO3P55854 AC080038.1-201ENST00000611274 1154 ntBASIC18.74■□□□□ 0.59
SUMO3P55854 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SUMO3P55854 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
SUMO3P55854 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SUMO3P55854 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.73■□□□□ 0.59
SUMO3P55854 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SUMO3P55854 AC004911.1-201ENST00000416316 871 ntBASIC18.73■□□□□ 0.59
SUMO3P55854 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.73■□□□□ 0.59
SUMO3P55854 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.73■□□□□ 0.59
SUMO3P55854 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.73■□□□□ 0.59
SUMO3P55854 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SUMO3P55854 PLK5-205ENST00000642079 1969 ntBASIC18.73■□□□□ 0.59
SUMO3P55854 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SUMO3P55854 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SUMO3P55854 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SUMO3P55854 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.72■□□□□ 0.59
SUMO3P55854 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SUMO3P55854 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.72■□□□□ 0.59
SUMO3P55854 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SUMO3P55854 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SUMO3P55854 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SUMO3P55854 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.72■□□□□ 0.59
SUMO3P55854 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
SUMO3P55854 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SUMO3P55854 AC073111.5-205ENST00000641717 521 ntBASIC18.72■□□□□ 0.59
SUMO3P55854 AC068338.2-201ENST00000563278 1430 ntBASIC18.72■□□□□ 0.59
SUMO3P55854 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SUMO3P55854 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SUMO3P55854 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.71■□□□□ 0.59
SUMO3P55854 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SUMO3P55854 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SUMO3P55854 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SUMO3P55854 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
SUMO3P55854 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SUMO3P55854 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SUMO3P55854 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SUMO3P55854 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SUMO3P55854 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.71■□□□□ 0.59
SUMO3P55854 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SUMO3P55854 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SUMO3P55854 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms