Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AL445228.2-201ENST00000605589 952 ntBASIC20.52■□□□□ 0.88
LIMK1P53667 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMK1P53667 AC092068.2-201ENST00000590491 1708 ntBASIC20.52■□□□□ 0.88
LIMK1P53667 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LIMK1P53667 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
LIMK1P53667 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
LIMK1P53667 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIMK1P53667 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMK1P53667 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
LIMK1P53667 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMK1P53667 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.51■□□□□ 0.87
LIMK1P53667 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMK1P53667 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.51■□□□□ 0.87
LIMK1P53667 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.51■□□□□ 0.87
LIMK1P53667 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.51■□□□□ 0.87
LIMK1P53667 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.51■□□□□ 0.87
LIMK1P53667 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.51■□□□□ 0.87
LIMK1P53667 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
LIMK1P53667 AL589743.5-201ENST00000616611 1050 ntBASIC20.51■□□□□ 0.87
LIMK1P53667 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.51■□□□□ 0.87
LIMK1P53667 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMK1P53667 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.51■□□□□ 0.87
LIMK1P53667 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIMK1P53667 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.5■□□□□ 0.87
LIMK1P53667 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIMK1P53667 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIMK1P53667 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LIMK1P53667 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
LIMK1P53667 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.5■□□□□ 0.87
LIMK1P53667 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LIMK1P53667 AL355472.2-201ENST00000422958 438 ntBASIC20.5■□□□□ 0.87
LIMK1P53667 TSPY7P-201ENST00000431358 1114 ntBASIC20.5■□□□□ 0.87
LIMK1P53667 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIMK1P53667 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.5■□□□□ 0.87
LIMK1P53667 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.5■□□□□ 0.87
LIMK1P53667 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.5■□□□□ 0.87
LIMK1P53667 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.5■□□□□ 0.87
LIMK1P53667 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LIMK1P53667 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
LIMK1P53667 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LIMK1P53667 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
LIMK1P53667 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.5■□□□□ 0.87
LIMK1P53667 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMK1P53667 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.49■□□□□ 0.87
LIMK1P53667 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMK1P53667 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.49■□□□□ 0.87
LIMK1P53667 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
LIMK1P53667 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LIMK1P53667 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
LIMK1P53667 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.49■□□□□ 0.87
LIMK1P53667 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LIMK1P53667 MIR4785-201ENST00000585005 73 ntBASIC20.49■□□□□ 0.87
LIMK1P53667 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LIMK1P53667 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.49■□□□□ 0.87
LIMK1P53667 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMK1P53667 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMK1P53667 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LIMK1P53667 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.48■□□□□ 0.87
LIMK1P53667 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIMK1P53667 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIMK1P53667 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIMK1P53667 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LIMK1P53667 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIMK1P53667 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LIMK1P53667 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.48■□□□□ 0.87
LIMK1P53667 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.48■□□□□ 0.87
LIMK1P53667 AL049637.2-201ENST00000641778 930 ntBASIC20.48■□□□□ 0.87
LIMK1P53667 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIMK1P53667 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIMK1P53667 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIMK1P53667 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIMK1P53667 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.47■□□□□ 0.87
LIMK1P53667 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.47■□□□□ 0.87
LIMK1P53667 POM121L13P-201ENST00000422362 380 ntBASIC20.47■□□□□ 0.87
LIMK1P53667 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIMK1P53667 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
LIMK1P53667 SOX15-203ENST00000570788 1093 ntBASIC20.47■□□□□ 0.87
LIMK1P53667 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LIMK1P53667 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.47■□□□□ 0.87
LIMK1P53667 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.47■□□□□ 0.87
LIMK1P53667 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.47■□□□□ 0.87
LIMK1P53667 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIMK1P53667 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIMK1P53667 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIMK1P53667 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIMK1P53667 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIMK1P53667 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LIMK1P53667 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
LIMK1P53667 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LIMK1P53667 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMK1P53667 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.46■□□□□ 0.87
LIMK1P53667 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMK1P53667 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMK1P53667 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMK1P53667 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.46■□□□□ 0.87
LIMK1P53667 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.46■□□□□ 0.87
LIMK1P53667 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.46■□□□□ 0.87
LIMK1P53667 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.46■□□□□ 0.87
LIMK1P53667 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LIMK1P53667 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms