Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSX2P35548 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSX2P35548 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSX2P35548 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSX2P35548 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.7■□□□□ 0.74
MSX2P35548 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSX2P35548 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSX2P35548 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.7■□□□□ 0.74
MSX2P35548 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
MSX2P35548 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.7■□□□□ 0.74
MSX2P35548 AC116562.4-201ENST00000641316 2276 ntBASIC19.7■□□□□ 0.74
MSX2P35548 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.7■□□□□ 0.74
MSX2P35548 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.7■□□□□ 0.74
MSX2P35548 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSX2P35548 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MSX2P35548 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.69■□□□□ 0.74
MSX2P35548 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
MSX2P35548 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX2P35548 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.69■□□□□ 0.74
MSX2P35548 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
MSX2P35548 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MSX2P35548 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX2P35548 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MSX2P35548 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX2P35548 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX2P35548 AC098818.2-201ENST00000564925 2320 ntBASIC19.69■□□□□ 0.74
MSX2P35548 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.69■□□□□ 0.74
MSX2P35548 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX2P35548 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
MSX2P35548 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
MSX2P35548 SMG8-203ENST00000578922 2178 ntBASIC19.68■□□□□ 0.74
MSX2P35548 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSX2P35548 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.68■□□□□ 0.74
MSX2P35548 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSX2P35548 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
MSX2P35548 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
MSX2P35548 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC19.68■□□□□ 0.74
MSX2P35548 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.68■□□□□ 0.74
MSX2P35548 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
MSX2P35548 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSX2P35548 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
MSX2P35548 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSX2P35548 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSX2P35548 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSX2P35548 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
MSX2P35548 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.68■□□□□ 0.74
MSX2P35548 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSX2P35548 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSX2P35548 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.67■□□□□ 0.74
MSX2P35548 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSX2P35548 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
MSX2P35548 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSX2P35548 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSX2P35548 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
MSX2P35548 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
MSX2P35548 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
MSX2P35548 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSX2P35548 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
MSX2P35548 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MSX2P35548 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSX2P35548 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
MSX2P35548 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSX2P35548 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSX2P35548 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
MSX2P35548 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
MSX2P35548 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSX2P35548 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.67■□□□□ 0.74
MSX2P35548 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
MSX2P35548 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSX2P35548 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.67■□□□□ 0.74
MSX2P35548 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSX2P35548 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSX2P35548 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSX2P35548 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSX2P35548 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSX2P35548 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MSX2P35548 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSX2P35548 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
MSX2P35548 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSX2P35548 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSX2P35548 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
MSX2P35548 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.66■□□□□ 0.74
MSX2P35548 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.66■□□□□ 0.74
MSX2P35548 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MSX2P35548 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSX2P35548 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSX2P35548 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.65■□□□□ 0.74
MSX2P35548 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSX2P35548 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.65■□□□□ 0.74
MSX2P35548 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
MSX2P35548 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSX2P35548 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MSX2P35548 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSX2P35548 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.65■□□□□ 0.74
MSX2P35548 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.65■□□□□ 0.74
MSX2P35548 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.65■□□□□ 0.74
MSX2P35548 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.65■□□□□ 0.74
MSX2P35548 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.65■□□□□ 0.74
MSX2P35548 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
MSX2P35548 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms