Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC26.39■■□□□ 1.81
COL5A3P25940 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
COL5A3P25940 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC26.39■■□□□ 1.81
COL5A3P25940 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC26.39■■□□□ 1.81
COL5A3P25940 SERP1-205ENST00000487153 657 ntTSL 4 BASIC26.39■■□□□ 1.81
COL5A3P25940 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC26.39■■□□□ 1.81
COL5A3P25940 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.81
COL5A3P25940 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
COL5A3P25940 AL049637.2-201ENST00000641778 930 ntBASIC26.39■■□□□ 1.81
COL5A3P25940 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
COL5A3P25940 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL5A3P25940 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
COL5A3P25940 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL5A3P25940 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC26.38■■□□□ 1.81
COL5A3P25940 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC26.38■■□□□ 1.81
COL5A3P25940 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
COL5A3P25940 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
COL5A3P25940 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
COL5A3P25940 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
COL5A3P25940 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL5A3P25940 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC26.38■■□□□ 1.81
COL5A3P25940 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL5A3P25940 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL5A3P25940 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
COL5A3P25940 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC26.37■■□□□ 1.81
COL5A3P25940 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
COL5A3P25940 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL5A3P25940 AL356652.1-201ENST00000615962 565 ntBASIC26.37■■□□□ 1.81
COL5A3P25940 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC26.37■■□□□ 1.81
COL5A3P25940 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
COL5A3P25940 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC26.36■■□□□ 1.81
COL5A3P25940 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC26.36■■□□□ 1.81
COL5A3P25940 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
COL5A3P25940 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC26.36■■□□□ 1.81
COL5A3P25940 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
COL5A3P25940 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
COL5A3P25940 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC26.36■■□□□ 1.81
COL5A3P25940 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
COL5A3P25940 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC26.36■■□□□ 1.81
COL5A3P25940 NXN-202ENST00000537628 1340 ntTSL 3 BASIC26.36■■□□□ 1.81
COL5A3P25940 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
COL5A3P25940 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
COL5A3P25940 FAM210CP-201ENST00000445714 574 ntBASIC26.36■■□□□ 1.81
COL5A3P25940 AC010331.1-201ENST00000611423 582 ntBASIC26.36■■□□□ 1.81
COL5A3P25940 MOK-233ENST00000524214 1539 ntTSL 2 BASIC26.36■■□□□ 1.81
COL5A3P25940 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL5A3P25940 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL5A3P25940 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC26.35■■□□□ 1.81
COL5A3P25940 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC26.35■■□□□ 1.81
COL5A3P25940 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
COL5A3P25940 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC26.35■■□□□ 1.81
COL5A3P25940 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC26.35■■□□□ 1.81
COL5A3P25940 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL5A3P25940 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC26.35■■□□□ 1.81
COL5A3P25940 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC26.35■■□□□ 1.81
COL5A3P25940 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
COL5A3P25940 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL5A3P25940 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC26.34■■□□□ 1.81
COL5A3P25940 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
COL5A3P25940 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC26.34■■□□□ 1.81
COL5A3P25940 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
COL5A3P25940 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC26.34■■□□□ 1.81
COL5A3P25940 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
COL5A3P25940 MAX-217ENST00000557277 728 ntTSL 3 BASIC26.34■■□□□ 1.81
COL5A3P25940 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
COL5A3P25940 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC26.34■■□□□ 1.81
COL5A3P25940 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
COL5A3P25940 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC26.34■■□□□ 1.81
COL5A3P25940 SNX21-213ENST00000614929 587 ntTSL 5 BASIC26.34■■□□□ 1.81
COL5A3P25940 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL5A3P25940 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC26.34■■□□□ 1.81
COL5A3P25940 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL5A3P25940 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
COL5A3P25940 GGT1-206ENST00000404223 952 ntTSL 2 BASIC26.34■■□□□ 1.81
COL5A3P25940 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC26.34■■□□□ 1.81
COL5A3P25940 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC26.34■■□□□ 1.81
COL5A3P25940 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC26.34■■□□□ 1.81
COL5A3P25940 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL5A3P25940 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL5A3P25940 AC113410.3-201ENST00000623366 203 ntBASIC26.34■■□□□ 1.81
COL5A3P25940 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL5A3P25940 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
COL5A3P25940 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
COL5A3P25940 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL5A3P25940 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
COL5A3P25940 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
COL5A3P25940 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
COL5A3P25940 AC211429.1-201ENST00000415277 523 ntBASIC26.33■■□□□ 1.81
COL5A3P25940 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL5A3P25940 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC26.33■■□□□ 1.81
COL5A3P25940 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
COL5A3P25940 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL5A3P25940 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC26.32■■□□□ 1.8
COL5A3P25940 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL5A3P25940 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC26.32■■□□□ 1.8
COL5A3P25940 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL5A3P25940 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL5A3P25940 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC26.32■■□□□ 1.8
COL5A3P25940 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC26.32■■□□□ 1.8
COL5A3P25940 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC26.32■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms