Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PRKNO60260 AL121832.2-201ENST00000610979 668 ntBASIC19.26■□□□□ 0.67
PRKNO60260 AL109923.1-201ENST00000618799 583 ntBASIC19.26■□□□□ 0.67
PRKNO60260 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.26■□□□□ 0.67
PRKNO60260 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.26■□□□□ 0.67
PRKNO60260 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.26■□□□□ 0.67
PRKNO60260 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
PRKNO60260 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PRKNO60260 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PRKNO60260 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.25■□□□□ 0.67
PRKNO60260 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PRKNO60260 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PRKNO60260 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.25■□□□□ 0.67
PRKNO60260 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.25■□□□□ 0.67
PRKNO60260 AL591742.1-201ENST00000604433 565 ntBASIC19.25■□□□□ 0.67
PRKNO60260 PKD1P6-201ENST00000343738 4769 ntBASIC19.25■□□□□ 0.67
PRKNO60260 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PRKNO60260 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
PRKNO60260 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.24■□□□□ 0.67
PRKNO60260 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PRKNO60260 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.24■□□□□ 0.67
PRKNO60260 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.24■□□□□ 0.67
PRKNO60260 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PRKNO60260 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PRKNO60260 AC093787.1-201ENST00000450396 207 ntBASIC19.24■□□□□ 0.67
PRKNO60260 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
PRKNO60260 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.24■□□□□ 0.67
PRKNO60260 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.24■□□□□ 0.67
PRKNO60260 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.24■□□□□ 0.67
PRKNO60260 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
PRKNO60260 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.24■□□□□ 0.67
PRKNO60260 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.24■□□□□ 0.67
PRKNO60260 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.24■□□□□ 0.67
PRKNO60260 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PRKNO60260 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PRKNO60260 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
PRKNO60260 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PRKNO60260 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PRKNO60260 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.23■□□□□ 0.67
PRKNO60260 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PRKNO60260 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
PRKNO60260 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
PRKNO60260 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PRKNO60260 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
PRKNO60260 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
PRKNO60260 AF201337.1-201ENST00000520239 748 ntBASIC19.23■□□□□ 0.67
PRKNO60260 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PRKNO60260 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.23■□□□□ 0.67
PRKNO60260 AC105036.2-201ENST00000569468 176 ntBASIC19.23■□□□□ 0.67
PRKNO60260 AC133552.2-202ENST00000575694 574 ntBASIC19.23■□□□□ 0.67
PRKNO60260 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.23■□□□□ 0.67
PRKNO60260 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PRKNO60260 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PRKNO60260 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PRKNO60260 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PRKNO60260 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PRKNO60260 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PRKNO60260 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.23■□□□□ 0.67
PRKNO60260 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PRKNO60260 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.22■□□□□ 0.67
PRKNO60260 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PRKNO60260 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PRKNO60260 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
PRKNO60260 AL049796.1-201ENST00000565336 1766 ntBASIC19.22■□□□□ 0.67
PRKNO60260 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PRKNO60260 TSPY6P-201ENST00000448518 926 ntBASIC19.22■□□□□ 0.67
PRKNO60260 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.22■□□□□ 0.67
PRKNO60260 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.22■□□□□ 0.67
PRKNO60260 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PRKNO60260 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.22■□□□□ 0.67
PRKNO60260 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
PRKNO60260 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
PRKNO60260 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
PRKNO60260 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.21■□□□□ 0.67
PRKNO60260 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.21■□□□□ 0.67
PRKNO60260 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PRKNO60260 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PRKNO60260 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
PRKNO60260 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
PRKNO60260 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.21■□□□□ 0.67
PRKNO60260 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
PRKNO60260 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.21■□□□□ 0.67
PRKNO60260 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PRKNO60260 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PRKNO60260 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
PRKNO60260 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
PRKNO60260 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PRKNO60260 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.21■□□□□ 0.67
PRKNO60260 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PRKNO60260 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PRKNO60260 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
PRKNO60260 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PRKNO60260 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.2■□□□□ 0.66
PRKNO60260 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.2■□□□□ 0.66
PRKNO60260 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.2■□□□□ 0.66
PRKNO60260 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.2■□□□□ 0.66
PRKNO60260 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PRKNO60260 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PRKNO60260 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PRKNO60260 AL355802.2-201ENST00000402069 882 ntBASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms