Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB3O15347 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB3O15347 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB3O15347 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB3O15347 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB3O15347 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB3O15347 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB3O15347 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
HMGB3O15347 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
HMGB3O15347 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB3O15347 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
HMGB3O15347 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGB3O15347 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC16.63■□□□□ 0.25
HMGB3O15347 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGB3O15347 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HMGB3O15347 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.63■□□□□ 0.25
HMGB3O15347 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
HMGB3O15347 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGB3O15347 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB3O15347 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB3O15347 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB3O15347 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB3O15347 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB3O15347 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB3O15347 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB3O15347 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGB3O15347 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB3O15347 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
HMGB3O15347 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB3O15347 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB3O15347 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
HMGB3O15347 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB3O15347 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB3O15347 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB3O15347 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB3O15347 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB3O15347 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB3O15347 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB3O15347 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB3O15347 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB3O15347 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB3O15347 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB3O15347 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB3O15347 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB3O15347 CLTA-210ENST00000540080 989 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB3O15347 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGB3O15347 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB3O15347 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB3O15347 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
HMGB3O15347 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB3O15347 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB3O15347 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB3O15347 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB3O15347 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HMGB3O15347 ADM-207ENST00000530439 1839 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB3O15347 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.61■□□□□ 0.25
HMGB3O15347 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB3O15347 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB3O15347 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB3O15347 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB3O15347 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC16.6■□□□□ 0.25
HMGB3O15347 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB3O15347 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC16.6■□□□□ 0.25
HMGB3O15347 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB3O15347 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HMGB3O15347 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB3O15347 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC16.6■□□□□ 0.25
HMGB3O15347 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC16.6■□□□□ 0.25
HMGB3O15347 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC16.6■□□□□ 0.25
HMGB3O15347 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGB3O15347 GABARAPL3-202ENST00000624044 1851 ntBASIC16.6■□□□□ 0.25
HMGB3O15347 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB3O15347 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGB3O15347 AP005212.1-201ENST00000581547 1997 ntBASIC16.6■□□□□ 0.25
HMGB3O15347 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.6■□□□□ 0.25
HMGB3O15347 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB3O15347 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB3O15347 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB3O15347 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGB3O15347 AC009102.2-201ENST00000606772 1639 ntBASIC16.59■□□□□ 0.25
HMGB3O15347 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB3O15347 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
HMGB3O15347 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB3O15347 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms