Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
NPHP1O15259 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
NPHP1O15259 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
NPHP1O15259 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC26.08■■□□□ 1.77
NPHP1O15259 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.77
NPHP1O15259 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
NPHP1O15259 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC26.08■■□□□ 1.77
NPHP1O15259 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
NPHP1O15259 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC26.08■■□□□ 1.76
NPHP1O15259 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC26.08■■□□□ 1.76
NPHP1O15259 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC26.07■■□□□ 1.76
NPHP1O15259 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC26.07■■□□□ 1.76
NPHP1O15259 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
NPHP1O15259 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC26.07■■□□□ 1.76
NPHP1O15259 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
NPHP1O15259 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC26.07■■□□□ 1.76
NPHP1O15259 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
NPHP1O15259 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
NPHP1O15259 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
NPHP1O15259 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
NPHP1O15259 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
NPHP1O15259 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC26.06■■□□□ 1.76
NPHP1O15259 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
NPHP1O15259 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC26.06■■□□□ 1.76
NPHP1O15259 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC26.06■■□□□ 1.76
NPHP1O15259 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
NPHP1O15259 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC26.06■■□□□ 1.76
NPHP1O15259 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC26.05■■□□□ 1.76
NPHP1O15259 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
NPHP1O15259 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC26.05■■□□□ 1.76
NPHP1O15259 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
NPHP1O15259 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC26.05■■□□□ 1.76
NPHP1O15259 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC26.05■■□□□ 1.76
NPHP1O15259 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
NPHP1O15259 AC026471.6-201ENST00000622954 1905 ntBASIC26.05■■□□□ 1.76
NPHP1O15259 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC26.05■■□□□ 1.76
NPHP1O15259 GCK-205ENST00000437084 1385 ntTSL 5 BASIC26.05■■□□□ 1.76
NPHP1O15259 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC26.05■■□□□ 1.76
NPHP1O15259 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
NPHP1O15259 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC26.05■■□□□ 1.76
NPHP1O15259 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC26.04■■□□□ 1.76
NPHP1O15259 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP1O15259 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP1O15259 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
NPHP1O15259 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP1O15259 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP1O15259 RN7SL471P-201ENST00000580476 299 ntBASIC26.04■■□□□ 1.76
NPHP1O15259 MIR4497-201ENST00000583208 89 ntBASIC26.04■■□□□ 1.76
NPHP1O15259 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC26.04■■□□□ 1.76
NPHP1O15259 NXN-202ENST00000537628 1340 ntTSL 3 BASIC26.04■■□□□ 1.76
NPHP1O15259 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP1O15259 CRK-204ENST00000574295 1391 ntTSL 5 BASIC26.04■■□□□ 1.76
NPHP1O15259 AC010542.4-201ENST00000563151 1910 ntBASIC26.04■■□□□ 1.76
NPHP1O15259 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
NPHP1O15259 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
NPHP1O15259 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
NPHP1O15259 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
NPHP1O15259 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
NPHP1O15259 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
NPHP1O15259 PTPA-214ENST00000423100 988 ntTSL 2 BASIC26.03■■□□□ 1.76
NPHP1O15259 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC26.03■■□□□ 1.76
NPHP1O15259 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC26.03■■□□□ 1.76
NPHP1O15259 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC26.03■■□□□ 1.76
NPHP1O15259 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC26.03■■□□□ 1.76
NPHP1O15259 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC26.03■■□□□ 1.76
NPHP1O15259 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
NPHP1O15259 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC26.03■■□□□ 1.76
NPHP1O15259 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC26.03■■□□□ 1.76
NPHP1O15259 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
NPHP1O15259 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC26.03■■□□□ 1.76
NPHP1O15259 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
NPHP1O15259 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
NPHP1O15259 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC26.02■■□□□ 1.76
NPHP1O15259 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
NPHP1O15259 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP1O15259 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC26.02■■□□□ 1.76
NPHP1O15259 AC233263.1-201ENST00000578059 224 ntBASIC26.02■■□□□ 1.76
NPHP1O15259 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP1O15259 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP1O15259 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP1O15259 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC26.02■■□□□ 1.76
NPHP1O15259 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC26.02■■□□□ 1.76
NPHP1O15259 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC26.02■■□□□ 1.76
NPHP1O15259 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP1O15259 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
NPHP1O15259 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC26.01■■□□□ 1.75
NPHP1O15259 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC26.01■■□□□ 1.75
NPHP1O15259 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
NPHP1O15259 SNORA78-201ENST00000459373 127 ntBASIC26.01■■□□□ 1.75
NPHP1O15259 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
NPHP1O15259 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC26.01■■□□□ 1.75
NPHP1O15259 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
NPHP1O15259 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC26.01■■□□□ 1.75
NPHP1O15259 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC26.01■■□□□ 1.75
NPHP1O15259 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC26.01■■□□□ 1.75
NPHP1O15259 AC069544.1-201ENST00000609399 999 ntBASIC26.01■■□□□ 1.75
NPHP1O15259 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC26.01■■□□□ 1.75
NPHP1O15259 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
NPHP1O15259 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC26■■□□□ 1.75
NPHP1O15259 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC26■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms