Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 AC112907.3-201ENST00000577781 2400 ntBASIC20.7■□□□□ 0.91
TRIM49D1C9J1S8 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.7■□□□□ 0.91
TRIM49D1C9J1S8 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 TSPY26P-201ENST00000476365 1326 ntBASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 AC135279.3-201ENST00000610945 1311 ntBASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49D1C9J1S8 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 AL162377.1-201ENST00000618844 1793 ntBASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
TRIM49D1C9J1S8 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 AC007952.6-201ENST00000573168 2673 ntBASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 AC003957.1-201ENST00000625108 2673 ntBASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 AC099791.1-201ENST00000416440 715 ntBASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 AC011484.1-201ENST00000377652 1995 ntBASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM49D1C9J1S8 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM49D1C9J1S8 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM49D1C9J1S8 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
TRIM49D1C9J1S8 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM49D1C9J1S8 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
TRIM49D1C9J1S8 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM49D1C9J1S8 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM49D1C9J1S8 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.66■□□□□ 0.9
TRIM49D1C9J1S8 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.66■□□□□ 0.9
TRIM49D1C9J1S8 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.66■□□□□ 0.9
TRIM49D1C9J1S8 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
TRIM49D1C9J1S8 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms