Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HIF3AQ9Y2N7 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.69■□□□□ 0.58
HIF3AQ9Y2N7 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.69■□□□□ 0.58
HIF3AQ9Y2N7 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HIF3AQ9Y2N7 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.69■□□□□ 0.58
HIF3AQ9Y2N7 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HIF3AQ9Y2N7 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.69■□□□□ 0.58
HIF3AQ9Y2N7 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.69■□□□□ 0.58
HIF3AQ9Y2N7 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
HIF3AQ9Y2N7 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HIF3AQ9Y2N7 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.69■□□□□ 0.58
HIF3AQ9Y2N7 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HIF3AQ9Y2N7 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HIF3AQ9Y2N7 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HIF3AQ9Y2N7 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HIF3AQ9Y2N7 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HIF3AQ9Y2N7 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 LINC01006-201ENST00000333319 2292 ntBASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HIF3AQ9Y2N7 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 KRT16P2-201ENST00000414673 1423 ntBASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 AC011484.1-201ENST00000377652 1995 ntBASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 AC123595.1-201ENST00000440769 1046 ntBASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HIF3AQ9Y2N7 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 AP005212.1-201ENST00000581547 1997 ntBASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 AC010141.2-201ENST00000452426 721 ntBASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 GABARAPL3-202ENST00000624044 1851 ntBASIC18.65■□□□□ 0.58
HIF3AQ9Y2N7 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
HIF3AQ9Y2N7 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms