Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 KRT16P2-201ENST00000414673 1423 ntBASIC23.8■■□□□ 1.4
DDX41Q9UJV9 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC23.8■■□□□ 1.4
DDX41Q9UJV9 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 AC061975.6-201ENST00000579045 1553 ntBASIC23.79■■□□□ 1.4
DDX41Q9UJV9 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 ABHD17AP1-201ENST00000358206 933 ntBASIC23.79■■□□□ 1.4
DDX41Q9UJV9 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 C11orf96-202ENST00000528572 1834 ntBASIC23.79■■□□□ 1.4
DDX41Q9UJV9 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC23.79■■□□□ 1.4
DDX41Q9UJV9 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
DDX41Q9UJV9 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
DDX41Q9UJV9 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
DDX41Q9UJV9 AC073210.2-201ENST00000430369 194 ntBASIC23.78■■□□□ 1.4
DDX41Q9UJV9 AC069152.1-201ENST00000438030 544 ntBASIC23.78■■□□□ 1.4
DDX41Q9UJV9 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
DDX41Q9UJV9 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
DDX41Q9UJV9 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
DDX41Q9UJV9 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC23.78■■□□□ 1.4
DDX41Q9UJV9 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
DDX41Q9UJV9 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 BET1L-204ENST00000410108 637 ntTSL 3 BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 CD99P1-205ENST00000527459 561 ntBASIC23.77■■□□□ 1.4
DDX41Q9UJV9 KRT18P6-201ENST00000555540 1265 ntBASIC23.77■■□□□ 1.4
DDX41Q9UJV9 RGMA-211ENST00000557420 989 ntTSL 3 BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 OR10C1-204ENST00000622521 1039 ntBASIC23.77■■□□□ 1.4
DDX41Q9UJV9 MARS-234ENST00000630571 216 ntTSL 5 BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 MARS-235ENST00000630803 183 ntTSL 3 BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
DDX41Q9UJV9 RBM17P2-201ENST00000616397 1405 ntBASIC23.76■■□□□ 1.39
DDX41Q9UJV9 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
DDX41Q9UJV9 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC23.76■■□□□ 1.39
DDX41Q9UJV9 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
DDX41Q9UJV9 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.76■■□□□ 1.39
DDX41Q9UJV9 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
DDX41Q9UJV9 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
DDX41Q9UJV9 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
DDX41Q9UJV9 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC23.76■■□□□ 1.39
DDX41Q9UJV9 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
DDX41Q9UJV9 AC133041.1-202ENST00000642053 222 ntBASIC23.76■■□□□ 1.39
DDX41Q9UJV9 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
DDX41Q9UJV9 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
DDX41Q9UJV9 AC026471.6-201ENST00000622954 1905 ntBASIC23.76■■□□□ 1.39
DDX41Q9UJV9 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC23.76■■□□□ 1.39
DDX41Q9UJV9 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
DDX41Q9UJV9 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
DDX41Q9UJV9 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC23.75■■□□□ 1.39
DDX41Q9UJV9 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
DDX41Q9UJV9 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
DDX41Q9UJV9 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
DDX41Q9UJV9 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
DDX41Q9UJV9 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
DDX41Q9UJV9 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
DDX41Q9UJV9 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms