Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC26.51■■□□□ 1.83
USP42Q9H9J4 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
USP42Q9H9J4 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
USP42Q9H9J4 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
USP42Q9H9J4 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
USP42Q9H9J4 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP42Q9H9J4 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP42Q9H9J4 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
USP42Q9H9J4 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP42Q9H9J4 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC26.5■■□□□ 1.83
USP42Q9H9J4 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC26.5■■□□□ 1.83
USP42Q9H9J4 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP42Q9H9J4 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC26.5■■□□□ 1.83
USP42Q9H9J4 FAM197Y4-202ENST00000622692 608 ntBASIC26.5■■□□□ 1.83
USP42Q9H9J4 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP42Q9H9J4 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP42Q9H9J4 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
USP42Q9H9J4 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC26.49■■□□□ 1.83
USP42Q9H9J4 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
USP42Q9H9J4 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC26.49■■□□□ 1.83
USP42Q9H9J4 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP42Q9H9J4 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
USP42Q9H9J4 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP42Q9H9J4 CDV3P1-201ENST00000471403 739 ntBASIC26.49■■□□□ 1.83
USP42Q9H9J4 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC26.49■■□□□ 1.83
USP42Q9H9J4 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC26.49■■□□□ 1.83
USP42Q9H9J4 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC26.49■■□□□ 1.83
USP42Q9H9J4 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC26.49■■□□□ 1.83
USP42Q9H9J4 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP42Q9H9J4 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
USP42Q9H9J4 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC26.49■■□□□ 1.83
USP42Q9H9J4 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
USP42Q9H9J4 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC26.48■■□□□ 1.83
USP42Q9H9J4 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
USP42Q9H9J4 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC26.48■■□□□ 1.83
USP42Q9H9J4 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
USP42Q9H9J4 MCRIP2P1-201ENST00000394346 511 ntBASIC26.48■■□□□ 1.83
USP42Q9H9J4 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC26.48■■□□□ 1.83
USP42Q9H9J4 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC26.48■■□□□ 1.83
USP42Q9H9J4 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC26.48■■□□□ 1.83
USP42Q9H9J4 RN7SL471P-201ENST00000580476 299 ntBASIC26.48■■□□□ 1.83
USP42Q9H9J4 Z99916.2-201ENST00000604037 246 ntBASIC26.48■■□□□ 1.83
USP42Q9H9J4 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC26.48■■□□□ 1.83
USP42Q9H9J4 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
USP42Q9H9J4 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
USP42Q9H9J4 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
USP42Q9H9J4 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC26.47■■□□□ 1.83
USP42Q9H9J4 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC26.47■■□□□ 1.83
USP42Q9H9J4 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC26.47■■□□□ 1.83
USP42Q9H9J4 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP42Q9H9J4 AC245052.3-201ENST00000450182 901 ntBASIC26.47■■□□□ 1.83
USP42Q9H9J4 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC26.47■■□□□ 1.83
USP42Q9H9J4 AC073912.3-201ENST00000624414 853 ntBASIC26.47■■□□□ 1.83
USP42Q9H9J4 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP42Q9H9J4 AC092368.3-202ENST00000574180 1591 ntBASIC26.47■■□□□ 1.83
USP42Q9H9J4 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP42Q9H9J4 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
USP42Q9H9J4 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
USP42Q9H9J4 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP42Q9H9J4 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
USP42Q9H9J4 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP42Q9H9J4 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
USP42Q9H9J4 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
USP42Q9H9J4 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC26.46■■□□□ 1.83
USP42Q9H9J4 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
USP42Q9H9J4 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC26.46■■□□□ 1.83
USP42Q9H9J4 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC26.46■■□□□ 1.83
USP42Q9H9J4 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC26.46■■□□□ 1.83
USP42Q9H9J4 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
USP42Q9H9J4 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC26.46■■□□□ 1.83
USP42Q9H9J4 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC26.46■■□□□ 1.83
USP42Q9H9J4 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.83
USP42Q9H9J4 KRT17P3-201ENST00000420566 1262 ntBASIC26.45■■□□□ 1.83
USP42Q9H9J4 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC26.45■■□□□ 1.83
USP42Q9H9J4 SLC29A4P2-201ENST00000504749 1089 ntBASIC26.45■■□□□ 1.83
USP42Q9H9J4 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.83
USP42Q9H9J4 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC26.45■■□□□ 1.83
USP42Q9H9J4 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
USP42Q9H9J4 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC26.45■■□□□ 1.83
USP42Q9H9J4 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
USP42Q9H9J4 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
USP42Q9H9J4 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC26.44■■□□□ 1.82
USP42Q9H9J4 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC26.44■■□□□ 1.82
USP42Q9H9J4 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC26.44■■□□□ 1.82
USP42Q9H9J4 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC26.44■■□□□ 1.82
USP42Q9H9J4 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC26.44■■□□□ 1.82
USP42Q9H9J4 AC069544.1-201ENST00000609399 999 ntBASIC26.44■■□□□ 1.82
USP42Q9H9J4 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
USP42Q9H9J4 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC26.44■■□□□ 1.82
USP42Q9H9J4 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC26.44■■□□□ 1.82
USP42Q9H9J4 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC26.44■■□□□ 1.82
USP42Q9H9J4 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
USP42Q9H9J4 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC26.44■■□□□ 1.82
USP42Q9H9J4 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC26.44■■□□□ 1.82
USP42Q9H9J4 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC26.43■■□□□ 1.82
USP42Q9H9J4 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
USP42Q9H9J4 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC26.43■■□□□ 1.82
USP42Q9H9J4 VMO1-204ENST00000441199 741 ntTSL 2 BASIC26.43■■□□□ 1.82
USP42Q9H9J4 GXYLT1P3-201ENST00000453058 1193 ntBASIC26.43■■□□□ 1.82
USP42Q9H9J4 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms