Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC23.18■■□□□ 1.3
UPF3AQ9H1J1 KLF2-202ENST00000592003 564 ntTSL 3 BASIC23.18■■□□□ 1.3
UPF3AQ9H1J1 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
UPF3AQ9H1J1 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
UPF3AQ9H1J1 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
UPF3AQ9H1J1 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
UPF3AQ9H1J1 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
UPF3AQ9H1J1 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
UPF3AQ9H1J1 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
UPF3AQ9H1J1 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
UPF3AQ9H1J1 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC23.16■■□□□ 1.3
UPF3AQ9H1J1 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
UPF3AQ9H1J1 SPIB-206ENST00000596074 847 ntTSL 2 BASIC23.16■■□□□ 1.3
UPF3AQ9H1J1 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
UPF3AQ9H1J1 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
UPF3AQ9H1J1 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
UPF3AQ9H1J1 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC23.16■■□□□ 1.3
UPF3AQ9H1J1 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
UPF3AQ9H1J1 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
UPF3AQ9H1J1 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 POM121L13P-201ENST00000422362 380 ntBASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
UPF3AQ9H1J1 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
UPF3AQ9H1J1 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
UPF3AQ9H1J1 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
UPF3AQ9H1J1 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC23.14■■□□□ 1.3
UPF3AQ9H1J1 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
UPF3AQ9H1J1 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
UPF3AQ9H1J1 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
UPF3AQ9H1J1 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.14■■□□□ 1.29
UPF3AQ9H1J1 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC23.14■■□□□ 1.29
UPF3AQ9H1J1 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
UPF3AQ9H1J1 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC23.14■■□□□ 1.29
UPF3AQ9H1J1 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
UPF3AQ9H1J1 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
UPF3AQ9H1J1 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC23.14■■□□□ 1.29
UPF3AQ9H1J1 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
UPF3AQ9H1J1 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 FAM99A-202ENST00000538190 1989 ntBASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
UPF3AQ9H1J1 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC23.12■■□□□ 1.29
UPF3AQ9H1J1 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
UPF3AQ9H1J1 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC23.12■■□□□ 1.29
UPF3AQ9H1J1 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC23.12■■□□□ 1.29
UPF3AQ9H1J1 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC23.12■■□□□ 1.29
UPF3AQ9H1J1 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC23.12■■□□□ 1.29
UPF3AQ9H1J1 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
UPF3AQ9H1J1 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms