Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.52■□□□□ 0.87
CFAP54Q96N23 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CFAP54Q96N23 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CFAP54Q96N23 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CFAP54Q96N23 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.87
CFAP54Q96N23 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CFAP54Q96N23 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CFAP54Q96N23 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.51■□□□□ 0.87
CFAP54Q96N23 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CFAP54Q96N23 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CFAP54Q96N23 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CFAP54Q96N23 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.51■□□□□ 0.87
CFAP54Q96N23 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.51■□□□□ 0.87
CFAP54Q96N23 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CFAP54Q96N23 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CFAP54Q96N23 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.51■□□□□ 0.87
CFAP54Q96N23 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CFAP54Q96N23 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.51■□□□□ 0.87
CFAP54Q96N23 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.5■□□□□ 0.87
CFAP54Q96N23 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CFAP54Q96N23 AL450487.1-201ENST00000426799 995 ntBASIC20.5■□□□□ 0.87
CFAP54Q96N23 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
CFAP54Q96N23 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
CFAP54Q96N23 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CFAP54Q96N23 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
CFAP54Q96N23 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CFAP54Q96N23 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CFAP54Q96N23 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CFAP54Q96N23 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CFAP54Q96N23 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CFAP54Q96N23 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.5■□□□□ 0.87
CFAP54Q96N23 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.5■□□□□ 0.87
CFAP54Q96N23 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CFAP54Q96N23 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CFAP54Q96N23 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CFAP54Q96N23 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CFAP54Q96N23 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CFAP54Q96N23 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CFAP54Q96N23 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.49■□□□□ 0.87
CFAP54Q96N23 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC20.49■□□□□ 0.87
CFAP54Q96N23 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.49■□□□□ 0.87
CFAP54Q96N23 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.49■□□□□ 0.87
CFAP54Q96N23 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.49■□□□□ 0.87
CFAP54Q96N23 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.49■□□□□ 0.87
CFAP54Q96N23 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CFAP54Q96N23 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.49■□□□□ 0.87
CFAP54Q96N23 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CFAP54Q96N23 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.49■□□□□ 0.87
CFAP54Q96N23 AL121906.2-201ENST00000621597 723 ntBASIC20.49■□□□□ 0.87
CFAP54Q96N23 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.49■□□□□ 0.87
CFAP54Q96N23 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CFAP54Q96N23 AC142381.3-201ENST00000568208 1670 ntBASIC20.48■□□□□ 0.87
CFAP54Q96N23 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.48■□□□□ 0.87
CFAP54Q96N23 AC104076.2-201ENST00000448912 469 ntBASIC20.48■□□□□ 0.87
CFAP54Q96N23 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.48■□□□□ 0.87
CFAP54Q96N23 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CFAP54Q96N23 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.48■□□□□ 0.87
CFAP54Q96N23 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CFAP54Q96N23 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.48■□□□□ 0.87
CFAP54Q96N23 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CFAP54Q96N23 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CFAP54Q96N23 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.48■□□□□ 0.87
CFAP54Q96N23 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.48■□□□□ 0.87
CFAP54Q96N23 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.48■□□□□ 0.87
CFAP54Q96N23 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CFAP54Q96N23 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CFAP54Q96N23 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CFAP54Q96N23 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CFAP54Q96N23 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
CFAP54Q96N23 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CFAP54Q96N23 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.47■□□□□ 0.87
CFAP54Q96N23 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CFAP54Q96N23 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.47■□□□□ 0.87
CFAP54Q96N23 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.47■□□□□ 0.87
CFAP54Q96N23 AL031963.3-201ENST00000606441 850 ntBASIC20.47■□□□□ 0.87
CFAP54Q96N23 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CFAP54Q96N23 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CFAP54Q96N23 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.47■□□□□ 0.87
CFAP54Q96N23 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CFAP54Q96N23 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
CFAP54Q96N23 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CFAP54Q96N23 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CFAP54Q96N23 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CFAP54Q96N23 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CFAP54Q96N23 AC023511.2-201ENST00000618803 211 ntBASIC20.47■□□□□ 0.87
CFAP54Q96N23 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CFAP54Q96N23 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CFAP54Q96N23 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CFAP54Q96N23 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.47■□□□□ 0.87
CFAP54Q96N23 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CFAP54Q96N23 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CFAP54Q96N23 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CFAP54Q96N23 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.47■□□□□ 0.87
CFAP54Q96N23 AL589743.5-201ENST00000616611 1050 ntBASIC20.47■□□□□ 0.87
CFAP54Q96N23 AC100791.3-201ENST00000617619 330 ntBASIC20.47■□□□□ 0.87
CFAP54Q96N23 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.47■□□□□ 0.87
CFAP54Q96N23 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CFAP54Q96N23 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CFAP54Q96N23 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CFAP54Q96N23 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms