Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VMP1Q96GC9 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.76■□□□□ 0.75
VMP1Q96GC9 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VMP1Q96GC9 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.76■□□□□ 0.75
VMP1Q96GC9 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.76■□□□□ 0.75
VMP1Q96GC9 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.76■□□□□ 0.75
VMP1Q96GC9 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
VMP1Q96GC9 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VMP1Q96GC9 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VMP1Q96GC9 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VMP1Q96GC9 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
VMP1Q96GC9 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VMP1Q96GC9 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.75■□□□□ 0.75
VMP1Q96GC9 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
VMP1Q96GC9 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
VMP1Q96GC9 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
VMP1Q96GC9 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VMP1Q96GC9 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VMP1Q96GC9 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VMP1Q96GC9 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VMP1Q96GC9 AL157384.1-201ENST00000445995 2473 ntBASIC19.75■□□□□ 0.75
VMP1Q96GC9 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.75■□□□□ 0.75
VMP1Q96GC9 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.75■□□□□ 0.75
VMP1Q96GC9 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VMP1Q96GC9 EEF1DP3-203ENST00000566025 782 ntBASIC19.75■□□□□ 0.75
VMP1Q96GC9 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
VMP1Q96GC9 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VMP1Q96GC9 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
VMP1Q96GC9 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VMP1Q96GC9 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VMP1Q96GC9 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VMP1Q96GC9 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VMP1Q96GC9 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VMP1Q96GC9 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VMP1Q96GC9 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.75■□□□□ 0.75
VMP1Q96GC9 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VMP1Q96GC9 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VMP1Q96GC9 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.74■□□□□ 0.75
VMP1Q96GC9 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VMP1Q96GC9 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VMP1Q96GC9 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VMP1Q96GC9 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VMP1Q96GC9 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VMP1Q96GC9 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VMP1Q96GC9 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
VMP1Q96GC9 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.74■□□□□ 0.75
VMP1Q96GC9 AC053503.5-201ENST00000601508 636 ntBASIC19.74■□□□□ 0.75
VMP1Q96GC9 AC092437.1-201ENST00000624794 1048 ntBASIC19.74■□□□□ 0.75
VMP1Q96GC9 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
VMP1Q96GC9 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.74■□□□□ 0.75
VMP1Q96GC9 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VMP1Q96GC9 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
VMP1Q96GC9 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VMP1Q96GC9 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
VMP1Q96GC9 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
VMP1Q96GC9 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VMP1Q96GC9 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VMP1Q96GC9 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.73■□□□□ 0.75
VMP1Q96GC9 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VMP1Q96GC9 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
VMP1Q96GC9 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.73■□□□□ 0.75
VMP1Q96GC9 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.73■□□□□ 0.75
VMP1Q96GC9 KRT18P11-201ENST00000435214 1283 ntBASIC19.73■□□□□ 0.75
VMP1Q96GC9 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.73■□□□□ 0.75
VMP1Q96GC9 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.73■□□□□ 0.75
VMP1Q96GC9 AC138907.5-202ENST00000569484 235 ntBASIC19.73■□□□□ 0.75
VMP1Q96GC9 AP001160.3-201ENST00000601484 763 ntBASIC19.73■□□□□ 0.75
VMP1Q96GC9 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.73■□□□□ 0.75
VMP1Q96GC9 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.73■□□□□ 0.75
VMP1Q96GC9 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VMP1Q96GC9 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
VMP1Q96GC9 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VMP1Q96GC9 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
VMP1Q96GC9 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
VMP1Q96GC9 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VMP1Q96GC9 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VMP1Q96GC9 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
VMP1Q96GC9 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VMP1Q96GC9 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VMP1Q96GC9 AC006015.1-201ENST00000429970 570 ntBASIC19.72■□□□□ 0.75
VMP1Q96GC9 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.72■□□□□ 0.75
VMP1Q96GC9 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
VMP1Q96GC9 AC010141.2-201ENST00000452426 721 ntBASIC19.72■□□□□ 0.75
VMP1Q96GC9 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.72■□□□□ 0.75
VMP1Q96GC9 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
VMP1Q96GC9 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.72■□□□□ 0.75
VMP1Q96GC9 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.72■□□□□ 0.75
VMP1Q96GC9 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VMP1Q96GC9 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VMP1Q96GC9 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
VMP1Q96GC9 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VMP1Q96GC9 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
VMP1Q96GC9 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
VMP1Q96GC9 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
VMP1Q96GC9 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VMP1Q96GC9 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VMP1Q96GC9 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.71■□□□□ 0.75
VMP1Q96GC9 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VMP1Q96GC9 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VMP1Q96GC9 AC003102.1-202ENST00000563394 1796 ntBASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms