Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 AL031432.3-201ENST00000607698 485 ntBASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 AC087289.5-201ENST00000586076 3175 ntBASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 PLK5-205ENST00000642079 1969 ntBASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF540Q8NDQ6 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF540Q8NDQ6 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 AC091305.1-201ENST00000479476 895 ntBASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 AC011298.3-201ENST00000615796 283 ntBASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF540Q8NDQ6 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ZNF540Q8NDQ6 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.65
ZNF540Q8NDQ6 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
ZNF540Q8NDQ6 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
ZNF540Q8NDQ6 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.08■□□□□ 0.65
ZNF540Q8NDQ6 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
ZNF540Q8NDQ6 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
ZNF540Q8NDQ6 ZNRF2P3-201ENST00000424200 374 ntBASIC19.08■□□□□ 0.64
ZNF540Q8NDQ6 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
ZNF540Q8NDQ6 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.08■□□□□ 0.64
ZNF540Q8NDQ6 AL136967.2-201ENST00000623968 743 ntBASIC19.08■□□□□ 0.64
ZNF540Q8NDQ6 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.08■□□□□ 0.64
ZNF540Q8NDQ6 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
ZNF540Q8NDQ6 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
ZNF540Q8NDQ6 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
ZNF540Q8NDQ6 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.08■□□□□ 0.64
ZNF540Q8NDQ6 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
ZNF540Q8NDQ6 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
ZNF540Q8NDQ6 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms