Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 MCRIP2P1-201ENST00000394346 511 ntBASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 TSPY7P-201ENST00000431358 1114 ntBASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 GCK-205ENST00000437084 1385 ntTSL 5 BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CSPG4Q6UVK1 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CSPG4Q6UVK1 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 AP001412.1-201ENST00000608405 714 ntBASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 AC092368.3-202ENST00000574180 1591 ntBASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 AC003102.1-202ENST00000563394 1796 ntBASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 RPS2P55-201ENST00000397318 883 ntBASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 TMPOP1-202ENST00000424642 1267 ntBASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 AC107956.1-201ENST00000494359 873 ntBASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 AL353708.3-201ENST00000610272 989 ntBASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CSPG4Q6UVK1 NFE2L3P1-201ENST00000588207 1959 ntBASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CSPG4Q6UVK1 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 PKM-204ENST00000449901 2526 ntTSL 2 BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 KRT18P68-201ENST00000392293 1000 ntBASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 AC087499.1-201ENST00000418141 1075 ntBASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 AC239809.2-201ENST00000415381 517 ntBASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.12■□□□□ 0.33
CSPG4Q6UVK1 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms