Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USP39Q53GS9 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
USP39Q53GS9 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USP39Q53GS9 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USP39Q53GS9 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.08■□□□□ 0.97
USP39Q53GS9 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
USP39Q53GS9 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.08■□□□□ 0.97
USP39Q53GS9 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.08■□□□□ 0.97
USP39Q53GS9 UNC93B5-201ENST00000530315 699 ntBASIC21.08■□□□□ 0.97
USP39Q53GS9 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USP39Q53GS9 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
USP39Q53GS9 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.08■□□□□ 0.97
USP39Q53GS9 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP39Q53GS9 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP39Q53GS9 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP39Q53GS9 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.08■□□□□ 0.96
USP39Q53GS9 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.08■□□□□ 0.96
USP39Q53GS9 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.07■□□□□ 0.96
USP39Q53GS9 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.07■□□□□ 0.96
USP39Q53GS9 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP39Q53GS9 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP39Q53GS9 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP39Q53GS9 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP39Q53GS9 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP39Q53GS9 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.07■□□□□ 0.96
USP39Q53GS9 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP39Q53GS9 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
USP39Q53GS9 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP39Q53GS9 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.07■□□□□ 0.96
USP39Q53GS9 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.07■□□□□ 0.96
USP39Q53GS9 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP39Q53GS9 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP39Q53GS9 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP39Q53GS9 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP39Q53GS9 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP39Q53GS9 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP39Q53GS9 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.06■□□□□ 0.96
USP39Q53GS9 AP003097.1-201ENST00000530657 1135 ntBASIC21.06■□□□□ 0.96
USP39Q53GS9 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
USP39Q53GS9 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP39Q53GS9 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP39Q53GS9 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP39Q53GS9 C11orf96-202ENST00000528572 1834 ntBASIC21.06■□□□□ 0.96
USP39Q53GS9 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP39Q53GS9 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.06■□□□□ 0.96
USP39Q53GS9 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
USP39Q53GS9 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP39Q53GS9 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
USP39Q53GS9 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.05■□□□□ 0.96
USP39Q53GS9 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP39Q53GS9 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP39Q53GS9 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.05■□□□□ 0.96
USP39Q53GS9 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.05■□□□□ 0.96
USP39Q53GS9 UNC93B4-201ENST00000505679 747 ntBASIC21.05■□□□□ 0.96
USP39Q53GS9 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.05■□□□□ 0.96
USP39Q53GS9 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.05■□□□□ 0.96
USP39Q53GS9 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.05■□□□□ 0.96
USP39Q53GS9 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
USP39Q53GS9 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.05■□□□□ 0.96
USP39Q53GS9 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
USP39Q53GS9 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP39Q53GS9 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP39Q53GS9 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP39Q53GS9 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
USP39Q53GS9 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
USP39Q53GS9 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP39Q53GS9 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.04■□□□□ 0.96
USP39Q53GS9 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
USP39Q53GS9 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP39Q53GS9 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
USP39Q53GS9 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.04■□□□□ 0.96
USP39Q53GS9 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP39Q53GS9 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP39Q53GS9 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP39Q53GS9 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP39Q53GS9 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
USP39Q53GS9 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.04■□□□□ 0.96
USP39Q53GS9 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP39Q53GS9 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
USP39Q53GS9 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP39Q53GS9 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP39Q53GS9 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.04■□□□□ 0.96
USP39Q53GS9 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP39Q53GS9 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP39Q53GS9 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP39Q53GS9 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP39Q53GS9 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
USP39Q53GS9 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP39Q53GS9 AC061975.6-201ENST00000579045 1553 ntBASIC21.03■□□□□ 0.96
USP39Q53GS9 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP39Q53GS9 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
USP39Q53GS9 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
USP39Q53GS9 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
USP39Q53GS9 AL596275.1-201ENST00000423464 877 ntBASIC21.03■□□□□ 0.96
USP39Q53GS9 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.03■□□□□ 0.96
USP39Q53GS9 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.03■□□□□ 0.96
USP39Q53GS9 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC21.03■□□□□ 0.96
USP39Q53GS9 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP39Q53GS9 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.03■□□□□ 0.96
USP39Q53GS9 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms