Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC17.59■□□□□ 0.41
PDLIM4P50479 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
PDLIM4P50479 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM4P50479 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM4P50479 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM4P50479 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PDLIM4P50479 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
PDLIM4P50479 AC010980.2-201ENST00000587099 1412 ntBASIC17.58■□□□□ 0.41
PDLIM4P50479 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PDLIM4P50479 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PDLIM4P50479 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PDLIM4P50479 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.58■□□□□ 0.4
PDLIM4P50479 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
PDLIM4P50479 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.58■□□□□ 0.4
PDLIM4P50479 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.58■□□□□ 0.4
PDLIM4P50479 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC17.58■□□□□ 0.4
PDLIM4P50479 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PDLIM4P50479 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PDLIM4P50479 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PDLIM4P50479 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
PDLIM4P50479 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC17.58■□□□□ 0.4
PDLIM4P50479 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PDLIM4P50479 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PDLIM4P50479 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PDLIM4P50479 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PDLIM4P50479 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PDLIM4P50479 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC17.57■□□□□ 0.4
PDLIM4P50479 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM4P50479 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC17.57■□□□□ 0.4
PDLIM4P50479 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.57■□□□□ 0.4
PDLIM4P50479 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PDLIM4P50479 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM4P50479 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.57■□□□□ 0.4
PDLIM4P50479 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM4P50479 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM4P50479 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM4P50479 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.57■□□□□ 0.4
PDLIM4P50479 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.57■□□□□ 0.4
PDLIM4P50479 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM4P50479 ECEL1P1-201ENST00000373592 1742 ntBASIC17.57■□□□□ 0.4
PDLIM4P50479 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM4P50479 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PDLIM4P50479 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.57■□□□□ 0.4
PDLIM4P50479 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM4P50479 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM4P50479 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.57■□□□□ 0.4
PDLIM4P50479 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
PDLIM4P50479 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC17.56■□□□□ 0.4
PDLIM4P50479 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM4P50479 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM4P50479 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM4P50479 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM4P50479 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM4P50479 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
PDLIM4P50479 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM4P50479 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM4P50479 KRT18P29-201ENST00000397031 1267 ntBASIC17.56■□□□□ 0.4
PDLIM4P50479 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.56■□□□□ 0.4
PDLIM4P50479 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM4P50479 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.56■□□□□ 0.4
PDLIM4P50479 CDV3P1-201ENST00000471403 739 ntBASIC17.56■□□□□ 0.4
PDLIM4P50479 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.56■□□□□ 0.4
PDLIM4P50479 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM4P50479 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
PDLIM4P50479 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
PDLIM4P50479 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM4P50479 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PDLIM4P50479 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PDLIM4P50479 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PDLIM4P50479 LSM12P1-201ENST00000411836 588 ntBASIC17.55■□□□□ 0.4
PDLIM4P50479 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.55■□□□□ 0.4
PDLIM4P50479 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.55■□□□□ 0.4
PDLIM4P50479 AC066615.1-201ENST00000640911 628 ntBASIC17.55■□□□□ 0.4
PDLIM4P50479 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
PDLIM4P50479 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PDLIM4P50479 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PDLIM4P50479 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC17.55■□□□□ 0.4
PDLIM4P50479 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PDLIM4P50479 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC17.54■□□□□ 0.4
PDLIM4P50479 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC17.54■□□□□ 0.4
PDLIM4P50479 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.54■□□□□ 0.4
PDLIM4P50479 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PDLIM4P50479 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.54■□□□□ 0.4
PDLIM4P50479 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PDLIM4P50479 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC17.54■□□□□ 0.4
PDLIM4P50479 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.54■□□□□ 0.4
PDLIM4P50479 GUSBP5-202ENST00000510805 1989 ntBASIC17.54■□□□□ 0.4
PDLIM4P50479 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PDLIM4P50479 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PDLIM4P50479 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PDLIM4P50479 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PDLIM4P50479 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.54■□□□□ 0.4
PDLIM4P50479 AC091874.3-201ENST00000512672 1195 ntBASIC17.54■□□□□ 0.4
PDLIM4P50479 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.54■□□□□ 0.4
PDLIM4P50479 ITM2C-210ENST00000620962 501 ntBASIC17.54■□□□□ 0.4
PDLIM4P50479 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
PDLIM4P50479 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
PDLIM4P50479 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PDLIM4P50479 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PDLIM4P50479 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms