Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.81■□□□□ 0.92
CXCL12P48061 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.81■□□□□ 0.92
CXCL12P48061 AC124016.1-201ENST00000609552 612 ntBASIC20.81■□□□□ 0.92
CXCL12P48061 AC133561.5-201ENST00000635547 218 ntBASIC20.81■□□□□ 0.92
CXCL12P48061 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
CXCL12P48061 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CXCL12P48061 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CXCL12P48061 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CXCL12P48061 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CXCL12P48061 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
CXCL12P48061 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CXCL12P48061 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
CXCL12P48061 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CXCL12P48061 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CXCL12P48061 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CXCL12P48061 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CXCL12P48061 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.8■□□□□ 0.92
CXCL12P48061 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CXCL12P48061 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.8■□□□□ 0.92
CXCL12P48061 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.8■□□□□ 0.92
CXCL12P48061 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CXCL12P48061 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.8■□□□□ 0.92
CXCL12P48061 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.8■□□□□ 0.92
CXCL12P48061 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.8■□□□□ 0.92
CXCL12P48061 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CXCL12P48061 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.8■□□□□ 0.92
CXCL12P48061 MIR4785-201ENST00000585005 73 ntBASIC20.8■□□□□ 0.92
CXCL12P48061 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CXCL12P48061 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CXCL12P48061 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CXCL12P48061 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.8■□□□□ 0.92
CXCL12P48061 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CXCL12P48061 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CXCL12P48061 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.79■□□□□ 0.92
CXCL12P48061 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CXCL12P48061 AC239809.2-201ENST00000415381 517 ntBASIC20.79■□□□□ 0.92
CXCL12P48061 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CXCL12P48061 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.79■□□□□ 0.92
CXCL12P48061 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CXCL12P48061 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.79■□□□□ 0.92
CXCL12P48061 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CXCL12P48061 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
CXCL12P48061 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.79■□□□□ 0.92
CXCL12P48061 C2orf69P4-201ENST00000565394 541 ntBASIC20.79■□□□□ 0.92
CXCL12P48061 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.79■□□□□ 0.92
CXCL12P48061 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.79■□□□□ 0.92
CXCL12P48061 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.79■□□□□ 0.92
CXCL12P48061 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CXCL12P48061 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CXCL12P48061 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CXCL12P48061 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CXCL12P48061 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CXCL12P48061 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.79■□□□□ 0.92
CXCL12P48061 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CXCL12P48061 AC093323.1-202ENST00000635031 2045 ntBASIC20.78■□□□□ 0.92
CXCL12P48061 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CXCL12P48061 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CXCL12P48061 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
CXCL12P48061 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.78■□□□□ 0.92
CXCL12P48061 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.78■□□□□ 0.92
CXCL12P48061 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CXCL12P48061 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.78■□□□□ 0.92
CXCL12P48061 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
CXCL12P48061 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.78■□□□□ 0.92
CXCL12P48061 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.78■□□□□ 0.92
CXCL12P48061 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.78■□□□□ 0.92
CXCL12P48061 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CXCL12P48061 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CXCL12P48061 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CXCL12P48061 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CXCL12P48061 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CXCL12P48061 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CXCL12P48061 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CXCL12P48061 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.77■□□□□ 0.92
CXCL12P48061 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL12P48061 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL12P48061 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL12P48061 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL12P48061 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL12P48061 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL12P48061 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL12P48061 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL12P48061 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL12P48061 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.77■□□□□ 0.92
CXCL12P48061 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL12P48061 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CXCL12P48061 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.77■□□□□ 0.92
CXCL12P48061 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.77■□□□□ 0.92
CXCL12P48061 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
CXCL12P48061 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL12P48061 AC110285.5-201ENST00000611501 352 ntBASIC20.77■□□□□ 0.92
CXCL12P48061 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL12P48061 AC120498.8-201ENST00000614275 531 ntBASIC20.77■□□□□ 0.92
CXCL12P48061 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL12P48061 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL12P48061 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL12P48061 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
CXCL12P48061 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
CXCL12P48061 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CXCL12P48061 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms