Protein–RNA interactions for Protein: P35523

CLCN1, Chloride channel protein 1, humanhuman

Predictions only

Length 988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1P35523 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.51■■□□□ 1.35
CLCN1P35523 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CLCN1P35523 SRD5A1P1-201ENST00000442297 786 ntBASIC23.51■■□□□ 1.35
CLCN1P35523 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.51■■□□□ 1.35
CLCN1P35523 pRNA.6-201ENST00000610482 90 ntBASIC23.51■■□□□ 1.35
CLCN1P35523 pRNA.5-201ENST00000612139 90 ntBASIC23.51■■□□□ 1.35
CLCN1P35523 pRNA.11-201ENST00000618423 90 ntBASIC23.51■■□□□ 1.35
CLCN1P35523 pRNA.13-201ENST00000619112 90 ntBASIC23.51■■□□□ 1.35
CLCN1P35523 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CLCN1P35523 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
CLCN1P35523 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
CLCN1P35523 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CLCN1P35523 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CLCN1P35523 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CLCN1P35523 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC23.51■■□□□ 1.35
CLCN1P35523 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
CLCN1P35523 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC23.5■■□□□ 1.35
CLCN1P35523 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CLCN1P35523 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CLCN1P35523 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC23.5■■□□□ 1.35
CLCN1P35523 AC131281.2-201ENST00000520478 145 ntBASIC23.5■■□□□ 1.35
CLCN1P35523 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.5■■□□□ 1.35
CLCN1P35523 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CLCN1P35523 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CLCN1P35523 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
CLCN1P35523 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
CLCN1P35523 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC23.5■■□□□ 1.35
CLCN1P35523 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CLCN1P35523 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
CLCN1P35523 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CLCN1P35523 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CLCN1P35523 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC23.49■■□□□ 1.35
CLCN1P35523 AC133637.1-201ENST00000624115 1537 ntBASIC23.49■■□□□ 1.35
CLCN1P35523 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
CLCN1P35523 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC23.49■■□□□ 1.35
CLCN1P35523 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC23.49■■□□□ 1.35
CLCN1P35523 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CLCN1P35523 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CLCN1P35523 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC23.49■■□□□ 1.35
CLCN1P35523 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CLCN1P35523 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
CLCN1P35523 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
CLCN1P35523 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
CLCN1P35523 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC23.49■■□□□ 1.35
CLCN1P35523 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
CLCN1P35523 MIR3181-201ENST00000578512 73 ntBASIC23.49■■□□□ 1.35
CLCN1P35523 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CLCN1P35523 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
CLCN1P35523 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
CLCN1P35523 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC23.49■■□□□ 1.35
CLCN1P35523 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLCN1P35523 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
CLCN1P35523 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLCN1P35523 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLCN1P35523 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CLCN1P35523 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLCN1P35523 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLCN1P35523 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC23.48■■□□□ 1.35
CLCN1P35523 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLCN1P35523 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLCN1P35523 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC23.48■■□□□ 1.35
CLCN1P35523 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLCN1P35523 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
CLCN1P35523 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLCN1P35523 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLCN1P35523 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLCN1P35523 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLCN1P35523 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.47■■□□□ 1.35
CLCN1P35523 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.47■■□□□ 1.35
CLCN1P35523 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
CLCN1P35523 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CLCN1P35523 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CLCN1P35523 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
CLCN1P35523 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CLCN1P35523 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC23.47■■□□□ 1.35
CLCN1P35523 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC23.47■■□□□ 1.35
CLCN1P35523 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC23.47■■□□□ 1.35
CLCN1P35523 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC23.47■■□□□ 1.35
CLCN1P35523 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
CLCN1P35523 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC23.47■■□□□ 1.35
CLCN1P35523 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.47■■□□□ 1.35
CLCN1P35523 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
CLCN1P35523 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CLCN1P35523 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC23.47■■□□□ 1.35
CLCN1P35523 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CLCN1P35523 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC23.46■■□□□ 1.35
CLCN1P35523 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC23.46■■□□□ 1.35
CLCN1P35523 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC23.46■■□□□ 1.35
CLCN1P35523 WAC-202ENST00000347934 2839 ntTSL 5 BASIC23.46■■□□□ 1.35
CLCN1P35523 USP39-204ENST00000409766 2033 ntTSL 2 BASIC23.46■■□□□ 1.35
CLCN1P35523 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC23.46■■□□□ 1.35
CLCN1P35523 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC23.46■■□□□ 1.35
CLCN1P35523 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC23.46■■□□□ 1.35
CLCN1P35523 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
CLCN1P35523 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CLCN1P35523 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CLCN1P35523 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
CLCN1P35523 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC23.46■■□□□ 1.35
CLCN1P35523 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CLCN1P35523 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms