Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.75■□□□□ 0.75
SDC1P18827 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SDC1P18827 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SDC1P18827 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SDC1P18827 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.75■□□□□ 0.75
SDC1P18827 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SDC1P18827 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.75■□□□□ 0.75
SDC1P18827 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SDC1P18827 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SDC1P18827 MIR638-201ENST00000385237 100 ntBASIC19.75■□□□□ 0.75
SDC1P18827 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SDC1P18827 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.75■□□□□ 0.75
SDC1P18827 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.75■□□□□ 0.75
SDC1P18827 AC138907.5-202ENST00000569484 235 ntBASIC19.75■□□□□ 0.75
SDC1P18827 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SDC1P18827 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SDC1P18827 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SDC1P18827 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.75■□□□□ 0.75
SDC1P18827 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
SDC1P18827 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.75■□□□□ 0.75
SDC1P18827 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.75■□□□□ 0.75
SDC1P18827 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.75■□□□□ 0.75
SDC1P18827 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.74■□□□□ 0.75
SDC1P18827 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
SDC1P18827 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SDC1P18827 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SDC1P18827 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.74■□□□□ 0.75
SDC1P18827 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.74■□□□□ 0.75
SDC1P18827 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.74■□□□□ 0.75
SDC1P18827 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SDC1P18827 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SDC1P18827 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SDC1P18827 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SDC1P18827 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SDC1P18827 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SDC1P18827 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SDC1P18827 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.74■□□□□ 0.75
SDC1P18827 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SDC1P18827 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SDC1P18827 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SDC1P18827 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SDC1P18827 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SDC1P18827 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SDC1P18827 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.73■□□□□ 0.75
SDC1P18827 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SDC1P18827 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
SDC1P18827 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.73■□□□□ 0.75
SDC1P18827 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SDC1P18827 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
SDC1P18827 FP700111.2-201ENST00000619190 1892 ntBASIC19.73■□□□□ 0.75
SDC1P18827 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SDC1P18827 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SDC1P18827 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SDC1P18827 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.72■□□□□ 0.75
SDC1P18827 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC1P18827 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC1P18827 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC1P18827 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC1P18827 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SDC1P18827 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC1P18827 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.72■□□□□ 0.75
SDC1P18827 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC1P18827 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SDC1P18827 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC1P18827 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.72■□□□□ 0.75
SDC1P18827 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.72■□□□□ 0.75
SDC1P18827 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC1P18827 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.72■□□□□ 0.75
SDC1P18827 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SDC1P18827 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SDC1P18827 LINC02228-203ENST00000641970 1355 ntBASIC19.71■□□□□ 0.75
SDC1P18827 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SDC1P18827 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SDC1P18827 KRT16P2-201ENST00000414673 1423 ntBASIC19.71■□□□□ 0.75
SDC1P18827 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.71■□□□□ 0.75
SDC1P18827 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SDC1P18827 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SDC1P18827 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SDC1P18827 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.71■□□□□ 0.75
SDC1P18827 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.71■□□□□ 0.75
SDC1P18827 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.71■□□□□ 0.75
SDC1P18827 AC010141.2-201ENST00000452426 721 ntBASIC19.71■□□□□ 0.75
SDC1P18827 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.71■□□□□ 0.75
SDC1P18827 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.71■□□□□ 0.75
SDC1P18827 RARRES2P11-201ENST00000635158 484 ntBASIC19.71■□□□□ 0.75
SDC1P18827 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SDC1P18827 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SDC1P18827 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SDC1P18827 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SDC1P18827 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SDC1P18827 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SDC1P18827 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
SDC1P18827 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.71■□□□□ 0.75
SDC1P18827 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.71■□□□□ 0.75
SDC1P18827 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SDC1P18827 AC020907.5-201ENST00000624372 1936 ntBASIC19.7■□□□□ 0.74
SDC1P18827 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SDC1P18827 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SDC1P18827 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
SDC1P18827 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms