Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CXCL1P09341 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC16.06■□□□□ 0.16
CXCL1P09341 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC16.06■□□□□ 0.16
CXCL1P09341 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC16.06■□□□□ 0.16
CXCL1P09341 BHLHE23-202ENST00000612929 1109 ntBASIC16.06■□□□□ 0.16
CXCL1P09341 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CXCL1P09341 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CXCL1P09341 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CXCL1P09341 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CXCL1P09341 AL512408.1-201ENST00000569378 2000 ntBASIC16.06■□□□□ 0.16
CXCL1P09341 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CXCL1P09341 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CXCL1P09341 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.05■□□□□ 0.16
CXCL1P09341 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC16.05■□□□□ 0.16
CXCL1P09341 PARN-205ENST00000539279 1557 ntTSL 2 BASIC16.05■□□□□ 0.16
CXCL1P09341 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CXCL1P09341 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC16.05■□□□□ 0.16
CXCL1P09341 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
CXCL1P09341 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
CXCL1P09341 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL1P09341 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC16.05■□□□□ 0.16
CXCL1P09341 AC005703.6-201ENST00000623265 1329 ntBASIC16.05■□□□□ 0.16
CXCL1P09341 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL1P09341 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL1P09341 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC16.05■□□□□ 0.16
CXCL1P09341 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL1P09341 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL1P09341 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL1P09341 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CXCL1P09341 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
CXCL1P09341 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC16.05■□□□□ 0.16
CXCL1P09341 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL1P09341 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL1P09341 FZD10-202ENST00000539839 3282 ntBASIC16.05■□□□□ 0.16
CXCL1P09341 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CXCL1P09341 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CXCL1P09341 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL1P09341 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC16.05■□□□□ 0.16
CXCL1P09341 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CXCL1P09341 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC16.05■□□□□ 0.16
CXCL1P09341 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.05■□□□□ 0.16
CXCL1P09341 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC16.05■□□□□ 0.16
CXCL1P09341 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL1P09341 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL1P09341 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL1P09341 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL1P09341 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL1P09341 PLK5-205ENST00000642079 1969 ntBASIC16.04■□□□□ 0.16
CXCL1P09341 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL1P09341 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL1P09341 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC16.04■□□□□ 0.16
CXCL1P09341 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL1P09341 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL1P09341 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CXCL1P09341 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL1P09341 TK2-202ENST00000417693 1046 ntTSL 2 BASIC16.04■□□□□ 0.16
CXCL1P09341 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC16.04■□□□□ 0.16
CXCL1P09341 DUX4L18-201ENST00000553347 1267 ntBASIC16.04■□□□□ 0.16
CXCL1P09341 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL1P09341 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL1P09341 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL1P09341 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
CXCL1P09341 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CXCL1P09341 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CXCL1P09341 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL1P09341 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
CXCL1P09341 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL1P09341 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC16.04■□□□□ 0.16
CXCL1P09341 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC16.04■□□□□ 0.16
CXCL1P09341 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL1P09341 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL1P09341 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL1P09341 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.03■□□□□ 0.16
CXCL1P09341 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.03■□□□□ 0.16
CXCL1P09341 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.03■□□□□ 0.16
CXCL1P09341 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL1P09341 AC093503.3-201ENST00000624917 2352 ntBASIC16.03■□□□□ 0.16
CXCL1P09341 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL1P09341 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL1P09341 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL1P09341 MIR6722-201ENST00000617286 78 ntBASIC16.03■□□□□ 0.16
CXCL1P09341 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.03■□□□□ 0.16
CXCL1P09341 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.03■□□□□ 0.16
CXCL1P09341 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL1P09341 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.03■□□□□ 0.16
CXCL1P09341 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL1P09341 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL1P09341 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.02■□□□□ 0.16
CXCL1P09341 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL1P09341 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CXCL1P09341 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL1P09341 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL1P09341 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL1P09341 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC16.02■□□□□ 0.16
CXCL1P09341 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL1P09341 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL1P09341 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
CXCL1P09341 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC16.02■□□□□ 0.16
CXCL1P09341 MIR4508-201ENST00000584178 70 ntBASIC16.02■□□□□ 0.16
CXCL1P09341 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms