Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
RAF1P04049 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RAF1P04049 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RAF1P04049 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.72■□□□□ 0.59
RAF1P04049 AC087239.1-201ENST00000622671 572 ntBASIC18.72■□□□□ 0.59
RAF1P04049 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RAF1P04049 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
RAF1P04049 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
RAF1P04049 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
RAF1P04049 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
RAF1P04049 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.72■□□□□ 0.59
RAF1P04049 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RAF1P04049 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RAF1P04049 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.72■□□□□ 0.59
RAF1P04049 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
RAF1P04049 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RAF1P04049 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RAF1P04049 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.71■□□□□ 0.59
RAF1P04049 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
RAF1P04049 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RAF1P04049 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.71■□□□□ 0.59
RAF1P04049 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.71■□□□□ 0.59
RAF1P04049 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
RAF1P04049 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RAF1P04049 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RAF1P04049 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RAF1P04049 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RAF1P04049 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RAF1P04049 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RAF1P04049 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RAF1P04049 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RAF1P04049 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RAF1P04049 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
RAF1P04049 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RAF1P04049 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RAF1P04049 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RAF1P04049 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
RAF1P04049 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.7■□□□□ 0.58
RAF1P04049 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RAF1P04049 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RAF1P04049 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
RAF1P04049 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC18.7■□□□□ 0.58
RAF1P04049 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
RAF1P04049 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.7■□□□□ 0.58
RAF1P04049 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.7■□□□□ 0.58
RAF1P04049 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.7■□□□□ 0.58
RAF1P04049 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.7■□□□□ 0.58
RAF1P04049 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RAF1P04049 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RAF1P04049 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.7■□□□□ 0.58
RAF1P04049 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RAF1P04049 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RAF1P04049 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RAF1P04049 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RAF1P04049 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RAF1P04049 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.69■□□□□ 0.58
RAF1P04049 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.69■□□□□ 0.58
RAF1P04049 LINC01521-201ENST00000504184 1943 ntBASIC18.69■□□□□ 0.58
RAF1P04049 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RAF1P04049 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RAF1P04049 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.69■□□□□ 0.58
RAF1P04049 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.69■□□□□ 0.58
RAF1P04049 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RAF1P04049 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
RAF1P04049 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.69■□□□□ 0.58
RAF1P04049 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.69■□□□□ 0.58
RAF1P04049 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.69■□□□□ 0.58
RAF1P04049 AC079140.4-201ENST00000507448 529 ntBASIC18.69■□□□□ 0.58
RAF1P04049 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.69■□□□□ 0.58
RAF1P04049 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.69■□□□□ 0.58
RAF1P04049 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.69■□□□□ 0.58
RAF1P04049 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.69■□□□□ 0.58
RAF1P04049 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.69■□□□□ 0.58
RAF1P04049 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RAF1P04049 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RAF1P04049 OR7E47P-201ENST00000546390 1422 ntBASIC18.68■□□□□ 0.58
RAF1P04049 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RAF1P04049 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RAF1P04049 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RAF1P04049 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RAF1P04049 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RAF1P04049 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RAF1P04049 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.68■□□□□ 0.58
RAF1P04049 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.68■□□□□ 0.58
RAF1P04049 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RAF1P04049 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.68■□□□□ 0.58
RAF1P04049 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.68■□□□□ 0.58
RAF1P04049 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.68■□□□□ 0.58
RAF1P04049 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RAF1P04049 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RAF1P04049 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RAF1P04049 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
RAF1P04049 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
RAF1P04049 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RAF1P04049 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RAF1P04049 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.67■□□□□ 0.58
RAF1P04049 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.67■□□□□ 0.58
RAF1P04049 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
RAF1P04049 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RAF1P04049 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms