Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 KRT18P68-201ENST00000392293 1000 ntBASIC18.89■□□□□ 0.61
SPTA1P02549 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.89■□□□□ 0.61
SPTA1P02549 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.89■□□□□ 0.61
SPTA1P02549 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.89■□□□□ 0.61
SPTA1P02549 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.89■□□□□ 0.61
SPTA1P02549 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.89■□□□□ 0.61
SPTA1P02549 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SPTA1P02549 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SPTA1P02549 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SPTA1P02549 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SPTA1P02549 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
SPTA1P02549 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SPTA1P02549 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SPTA1P02549 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.89■□□□□ 0.61
SPTA1P02549 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SPTA1P02549 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SPTA1P02549 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SPTA1P02549 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.89■□□□□ 0.61
SPTA1P02549 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.88■□□□□ 0.61
SPTA1P02549 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SPTA1P02549 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SPTA1P02549 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
SPTA1P02549 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.88■□□□□ 0.61
SPTA1P02549 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.88■□□□□ 0.61
SPTA1P02549 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.88■□□□□ 0.61
SPTA1P02549 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
SPTA1P02549 AC120498.8-201ENST00000614275 531 ntBASIC18.88■□□□□ 0.61
SPTA1P02549 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC18.88■□□□□ 0.61
SPTA1P02549 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC18.88■□□□□ 0.61
SPTA1P02549 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.88■□□□□ 0.61
SPTA1P02549 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SPTA1P02549 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.88■□□□□ 0.61
SPTA1P02549 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.88■□□□□ 0.61
SPTA1P02549 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.88■□□□□ 0.61
SPTA1P02549 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.88■□□□□ 0.61
SPTA1P02549 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.88■□□□□ 0.61
SPTA1P02549 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
SPTA1P02549 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SPTA1P02549 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SPTA1P02549 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SPTA1P02549 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SPTA1P02549 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.87■□□□□ 0.61
SPTA1P02549 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
SPTA1P02549 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SPTA1P02549 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.87■□□□□ 0.61
SPTA1P02549 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SPTA1P02549 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SPTA1P02549 FAM21FP-204ENST00000608637 956 ntBASIC18.87■□□□□ 0.61
SPTA1P02549 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SPTA1P02549 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SPTA1P02549 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SPTA1P02549 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SPTA1P02549 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.87■□□□□ 0.61
SPTA1P02549 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SPTA1P02549 CDV3P1-201ENST00000471403 739 ntBASIC18.86■□□□□ 0.61
SPTA1P02549 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.86■□□□□ 0.61
SPTA1P02549 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
SPTA1P02549 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.86■□□□□ 0.61
SPTA1P02549 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.86■□□□□ 0.61
SPTA1P02549 AC145285.6-201ENST00000604632 637 ntBASIC18.86■□□□□ 0.61
SPTA1P02549 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SPTA1P02549 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SPTA1P02549 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SPTA1P02549 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SPTA1P02549 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.86■□□□□ 0.61
SPTA1P02549 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SPTA1P02549 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.86■□□□□ 0.61
SPTA1P02549 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SPTA1P02549 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.86■□□□□ 0.61
SPTA1P02549 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
SPTA1P02549 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.86■□□□□ 0.61
SPTA1P02549 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.85■□□□□ 0.61
SPTA1P02549 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SPTA1P02549 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SPTA1P02549 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SPTA1P02549 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.85■□□□□ 0.61
SPTA1P02549 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.85■□□□□ 0.61
SPTA1P02549 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.85■□□□□ 0.61
SPTA1P02549 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SPTA1P02549 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SPTA1P02549 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SPTA1P02549 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SPTA1P02549 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.85■□□□□ 0.61
SPTA1P02549 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SPTA1P02549 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SPTA1P02549 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.85■□□□□ 0.61
SPTA1P02549 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SPTA1P02549 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
SPTA1P02549 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.84■□□□□ 0.61
SPTA1P02549 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SPTA1P02549 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SPTA1P02549 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SPTA1P02549 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SPTA1P02549 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SPTA1P02549 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.84■□□□□ 0.61
SPTA1P02549 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
SPTA1P02549 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SPTA1P02549 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SPTA1P02549 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SPTA1P02549 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms