Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TNFP01375 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TNFP01375 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.31■□□□□ 0.84
TNFP01375 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TNFP01375 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFP01375 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.3■□□□□ 0.84
TNFP01375 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFP01375 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFP01375 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.3■□□□□ 0.84
TNFP01375 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFP01375 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
TNFP01375 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFP01375 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFP01375 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
TNFP01375 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFP01375 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFP01375 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFP01375 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.3■□□□□ 0.84
TNFP01375 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.3■□□□□ 0.84
TNFP01375 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.3■□□□□ 0.84
TNFP01375 AL589743.5-201ENST00000616611 1050 ntBASIC20.3■□□□□ 0.84
TNFP01375 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.3■□□□□ 0.84
TNFP01375 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFP01375 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFP01375 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFP01375 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFP01375 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.3■□□□□ 0.84
TNFP01375 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TNFP01375 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TNFP01375 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
TNFP01375 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
TNFP01375 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
TNFP01375 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TNFP01375 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
TNFP01375 KRT18P68-201ENST00000392293 1000 ntBASIC20.29■□□□□ 0.84
TNFP01375 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.29■□□□□ 0.84
TNFP01375 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
TNFP01375 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.29■□□□□ 0.84
TNFP01375 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.29■□□□□ 0.84
TNFP01375 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
TNFP01375 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TNFP01375 AL117328.2-201ENST00000624617 1940 ntBASIC20.29■□□□□ 0.84
TNFP01375 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
TNFP01375 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TNFP01375 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TNFP01375 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
TNFP01375 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TNFP01375 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TNFP01375 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.29■□□□□ 0.84
TNFP01375 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.28■□□□□ 0.84
TNFP01375 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TNFP01375 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TNFP01375 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TNFP01375 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
TNFP01375 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TNFP01375 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TNFP01375 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TNFP01375 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
TNFP01375 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TNFP01375 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TNFP01375 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.27■□□□□ 0.84
TNFP01375 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.27■□□□□ 0.84
TNFP01375 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.27■□□□□ 0.84
TNFP01375 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.27■□□□□ 0.84
TNFP01375 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
TNFP01375 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TNFP01375 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TNFP01375 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TNFP01375 POU5F1P3-201ENST00000428824 1078 ntBASIC20.27■□□□□ 0.84
TNFP01375 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.27■□□□□ 0.84
TNFP01375 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.27■□□□□ 0.84
TNFP01375 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.27■□□□□ 0.84
TNFP01375 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TNFP01375 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TNFP01375 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
TNFP01375 AC012676.1-201ENST00000574705 1949 ntBASIC20.27■□□□□ 0.84
TNFP01375 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
TNFP01375 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFP01375 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.26■□□□□ 0.83
TNFP01375 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.26■□□□□ 0.83
TNFP01375 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TNFP01375 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFP01375 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFP01375 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFP01375 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.26■□□□□ 0.83
TNFP01375 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TNFP01375 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.26■□□□□ 0.83
TNFP01375 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TNFP01375 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFP01375 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TNFP01375 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFP01375 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFP01375 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
TNFP01375 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.26■□□□□ 0.83
TNFP01375 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
TNFP01375 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.26■□□□□ 0.83
TNFP01375 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TNFP01375 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
TNFP01375 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFP01375 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms