Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CYP2T3P-201ENST00000601990 817 ntBASIC26.32■■□□□ 1.8
CACNA1FO60840 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC26.32■■□□□ 1.8
CACNA1FO60840 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CACNA1FO60840 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC26.32■■□□□ 1.8
CACNA1FO60840 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CACNA1FO60840 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CACNA1FO60840 MCRIP2P1-201ENST00000394346 511 ntBASIC26.31■■□□□ 1.8
CACNA1FO60840 AL355802.2-201ENST00000402069 882 ntBASIC26.31■■□□□ 1.8
CACNA1FO60840 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC26.31■■□□□ 1.8
CACNA1FO60840 AL138781.1-201ENST00000566567 1274 ntBASIC26.31■■□□□ 1.8
CACNA1FO60840 AC105036.2-201ENST00000569468 176 ntBASIC26.31■■□□□ 1.8
CACNA1FO60840 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC26.31■■□□□ 1.8
CACNA1FO60840 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
CACNA1FO60840 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC26.31■■□□□ 1.8
CACNA1FO60840 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CACNA1FO60840 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CACNA1FO60840 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CACNA1FO60840 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC26.31■■□□□ 1.8
CACNA1FO60840 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
CACNA1FO60840 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
CACNA1FO60840 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CACNA1FO60840 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC26.31■■□□□ 1.8
CACNA1FO60840 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
CACNA1FO60840 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC26.31■■□□□ 1.8
CACNA1FO60840 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CACNA1FO60840 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CACNA1FO60840 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CACNA1FO60840 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CACNA1FO60840 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CACNA1FO60840 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC26.3■■□□□ 1.8
CACNA1FO60840 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC26.3■■□□□ 1.8
CACNA1FO60840 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC26.3■■□□□ 1.8
CACNA1FO60840 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CACNA1FO60840 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
CACNA1FO60840 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CACNA1FO60840 AL049796.1-201ENST00000565336 1766 ntBASIC26.3■■□□□ 1.8
CACNA1FO60840 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CACNA1FO60840 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC26.29■■□□□ 1.8
CACNA1FO60840 AC083906.2-201ENST00000511578 360 ntBASIC26.29■■□□□ 1.8
CACNA1FO60840 DENND3-207ENST00000518347 850 ntTSL 2 BASIC26.29■■□□□ 1.8
CACNA1FO60840 AC105020.6-201ENST00000621523 1217 ntBASIC26.29■■□□□ 1.8
CACNA1FO60840 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
CACNA1FO60840 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC26.29■■□□□ 1.8
CACNA1FO60840 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CACNA1FO60840 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
CACNA1FO60840 BX276092.2-201ENST00000417668 665 ntBASIC26.29■■□□□ 1.8
CACNA1FO60840 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC26.29■■□□□ 1.8
CACNA1FO60840 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC26.29■■□□□ 1.8
CACNA1FO60840 AC083880.1-201ENST00000608266 535 ntBASIC26.29■■□□□ 1.8
CACNA1FO60840 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC26.29■■□□□ 1.8
CACNA1FO60840 AC008694.1-202ENST00000636953 945 ntBASIC26.29■■□□□ 1.8
CACNA1FO60840 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC26.29■■□□□ 1.8
CACNA1FO60840 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC26.29■■□□□ 1.8
CACNA1FO60840 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CACNA1FO60840 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CACNA1FO60840 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CACNA1FO60840 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
CACNA1FO60840 AC093787.1-201ENST00000450396 207 ntBASIC26.28■■□□□ 1.8
CACNA1FO60840 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CACNA1FO60840 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
CACNA1FO60840 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
CACNA1FO60840 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CACNA1FO60840 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CACNA1FO60840 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
CACNA1FO60840 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CACNA1FO60840 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
CACNA1FO60840 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
CACNA1FO60840 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CACNA1FO60840 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CACNA1FO60840 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
CACNA1FO60840 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC26.27■■□□□ 1.8
CACNA1FO60840 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CACNA1FO60840 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CACNA1FO60840 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CACNA1FO60840 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CACNA1FO60840 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
CACNA1FO60840 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC26.27■■□□□ 1.8
CACNA1FO60840 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC26.27■■□□□ 1.8
CACNA1FO60840 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CACNA1FO60840 AC069152.1-201ENST00000438030 544 ntBASIC26.27■■□□□ 1.8
CACNA1FO60840 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC26.27■■□□□ 1.8
CACNA1FO60840 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CACNA1FO60840 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
CACNA1FO60840 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
CACNA1FO60840 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC26.26■■□□□ 1.79
CACNA1FO60840 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CACNA1FO60840 MYC-209ENST00000641252 345 ntBASIC26.26■■□□□ 1.79
CACNA1FO60840 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
CACNA1FO60840 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC26.26■■□□□ 1.79
CACNA1FO60840 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC26.26■■□□□ 1.79
CACNA1FO60840 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC26.26■■□□□ 1.79
CACNA1FO60840 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CACNA1FO60840 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC26.26■■□□□ 1.79
CACNA1FO60840 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
CACNA1FO60840 PGM5P4-201ENST00000421970 445 ntBASIC26.26■■□□□ 1.79
CACNA1FO60840 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC26.26■■□□□ 1.79
CACNA1FO60840 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CACNA1FO60840 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CACNA1FO60840 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC26.25■■□□□ 1.79
CACNA1FO60840 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC26.25■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms