Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.21■□□□□ 0.99
HOXC11O43248 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.21■□□□□ 0.99
HOXC11O43248 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC11O43248 PRORSD1P-201ENST00000295112 541 ntBASIC21.21■□□□□ 0.99
HOXC11O43248 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC11O43248 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC11O43248 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC11O43248 KRT18P68-201ENST00000392293 1000 ntBASIC21.21■□□□□ 0.99
HOXC11O43248 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.21■□□□□ 0.99
HOXC11O43248 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.21■□□□□ 0.99
HOXC11O43248 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
HOXC11O43248 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.21■□□□□ 0.99
HOXC11O43248 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
HOXC11O43248 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC11O43248 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.21■□□□□ 0.99
HOXC11O43248 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC11O43248 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC11O43248 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC11O43248 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
HOXC11O43248 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
HOXC11O43248 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.2■□□□□ 0.98
HOXC11O43248 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
HOXC11O43248 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.2■□□□□ 0.98
HOXC11O43248 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
HOXC11O43248 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.2■□□□□ 0.98
HOXC11O43248 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.2■□□□□ 0.98
HOXC11O43248 UNC93B5-201ENST00000530315 699 ntBASIC21.2■□□□□ 0.98
HOXC11O43248 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
HOXC11O43248 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
HOXC11O43248 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
HOXC11O43248 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC11O43248 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.2■□□□□ 0.98
HOXC11O43248 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.2■□□□□ 0.98
HOXC11O43248 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.2■□□□□ 0.98
HOXC11O43248 CYP21A1P-202ENST00000354927 1481 ntBASIC21.2■□□□□ 0.98
HOXC11O43248 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
HOXC11O43248 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC11O43248 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
HOXC11O43248 AC116050.2-201ENST00000612102 1779 ntBASIC21.19■□□□□ 0.98
HOXC11O43248 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.19■□□□□ 0.98
HOXC11O43248 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC11O43248 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC11O43248 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.19■□□□□ 0.98
HOXC11O43248 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.19■□□□□ 0.98
HOXC11O43248 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.19■□□□□ 0.98
HOXC11O43248 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC11O43248 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC11O43248 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC11O43248 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC11O43248 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC11O43248 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC11O43248 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.19■□□□□ 0.98
HOXC11O43248 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC11O43248 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.19■□□□□ 0.98
HOXC11O43248 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC11O43248 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC11O43248 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
HOXC11O43248 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC11O43248 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC11O43248 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC11O43248 HLA-B-256ENST00000639848 1089 ntBASIC21.18■□□□□ 0.98
HOXC11O43248 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC11O43248 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.18■□□□□ 0.98
HOXC11O43248 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
HOXC11O43248 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC11O43248 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC11O43248 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC11O43248 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
HOXC11O43248 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC11O43248 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC11O43248 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.17■□□□□ 0.98
HOXC11O43248 AC060766.5-201ENST00000590539 871 ntBASIC21.17■□□□□ 0.98
HOXC11O43248 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC11O43248 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
HOXC11O43248 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC11O43248 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC11O43248 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC11O43248 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.16■□□□□ 0.98
HOXC11O43248 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC11O43248 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.16■□□□□ 0.98
HOXC11O43248 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.16■□□□□ 0.98
HOXC11O43248 AC026366.1-201ENST00000488803 879 ntBASIC21.16■□□□□ 0.98
HOXC11O43248 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.16■□□□□ 0.98
HOXC11O43248 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC11O43248 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms