Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SDCBPO00560 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDCBPO00560 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SDCBPO00560 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC17.58■□□□□ 0.41
SDCBPO00560 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SDCBPO00560 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SDCBPO00560 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
SDCBPO00560 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
SDCBPO00560 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SDCBPO00560 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
SDCBPO00560 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SDCBPO00560 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
SDCBPO00560 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SDCBPO00560 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SDCBPO00560 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SDCBPO00560 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SDCBPO00560 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SDCBPO00560 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SDCBPO00560 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC17.58■□□□□ 0.4
SDCBPO00560 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.58■□□□□ 0.4
SDCBPO00560 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SDCBPO00560 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
SDCBPO00560 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC17.58■□□□□ 0.4
SDCBPO00560 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC17.58■□□□□ 0.4
SDCBPO00560 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.58■□□□□ 0.4
SDCBPO00560 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SDCBPO00560 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SDCBPO00560 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SDCBPO00560 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SDCBPO00560 RASA4CP-201ENST00000424092 1398 ntBASIC17.57■□□□□ 0.4
SDCBPO00560 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SDCBPO00560 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SDCBPO00560 AFG3L1P-217ENST00000557444 2447 ntBASIC17.57■□□□□ 0.4
SDCBPO00560 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SDCBPO00560 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC17.57■□□□□ 0.4
SDCBPO00560 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SDCBPO00560 LHPP-203ENST00000392757 840 ntTSL 3 BASIC17.57■□□□□ 0.4
SDCBPO00560 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SDCBPO00560 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC17.57■□□□□ 0.4
SDCBPO00560 AC091305.1-201ENST00000479476 895 ntBASIC17.57■□□□□ 0.4
SDCBPO00560 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC17.57■□□□□ 0.4
SDCBPO00560 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.57■□□□□ 0.4
SDCBPO00560 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SDCBPO00560 AC105233.4-201ENST00000642045 216 ntBASIC17.57■□□□□ 0.4
SDCBPO00560 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC17.57■□□□□ 0.4
SDCBPO00560 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SDCBPO00560 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SDCBPO00560 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC17.57■□□□□ 0.4
SDCBPO00560 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
SDCBPO00560 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SDCBPO00560 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SDCBPO00560 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
SDCBPO00560 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC17.57■□□□□ 0.4
SDCBPO00560 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SDCBPO00560 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDCBPO00560 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC17.56■□□□□ 0.4
SDCBPO00560 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.56■□□□□ 0.4
SDCBPO00560 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDCBPO00560 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC17.56■□□□□ 0.4
SDCBPO00560 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDCBPO00560 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDCBPO00560 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDCBPO00560 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDCBPO00560 MIR939-201ENST00000401314 82 ntBASIC17.56■□□□□ 0.4
SDCBPO00560 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SDCBPO00560 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SDCBPO00560 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC17.56■□□□□ 0.4
SDCBPO00560 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC17.56■□□□□ 0.4
SDCBPO00560 AL139246.5-201ENST00000606645 996 ntBASIC17.56■□□□□ 0.4
SDCBPO00560 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SDCBPO00560 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDCBPO00560 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.56■□□□□ 0.4
SDCBPO00560 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SDCBPO00560 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SDCBPO00560 AP006587.3-201ENST00000525742 1516 ntBASIC17.56■□□□□ 0.4
SDCBPO00560 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDCBPO00560 ASL-203ENST00000380839 1765 ntTSL 5 BASIC17.56■□□□□ 0.4
SDCBPO00560 AC007952.6-201ENST00000573168 2673 ntBASIC17.55■□□□□ 0.4
SDCBPO00560 AC003957.1-201ENST00000625108 2673 ntBASIC17.55■□□□□ 0.4
SDCBPO00560 ERF-202ENST00000440177 2032 ntTSL 2 BASIC17.55■□□□□ 0.4
SDCBPO00560 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.55■□□□□ 0.4
SDCBPO00560 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDCBPO00560 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDCBPO00560 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC17.55■□□□□ 0.4
SDCBPO00560 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDCBPO00560 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDCBPO00560 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDCBPO00560 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
SDCBPO00560 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SDCBPO00560 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC17.55■□□□□ 0.4
SDCBPO00560 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SDCBPO00560 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDCBPO00560 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC17.55■□□□□ 0.4
SDCBPO00560 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.55■□□□□ 0.4
SDCBPO00560 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SDCBPO00560 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC17.55■□□□□ 0.4
SDCBPO00560 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDCBPO00560 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SDCBPO00560 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDCBPO00560 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms