Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
AP4E1Q9UPM8 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
AP4E1Q9UPM8 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
AP4E1Q9UPM8 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 MIR935-201ENST00000401179 91 ntBASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 SLC7A5P1-201ENST00000568957 537 ntBASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
AP4E1Q9UPM8 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 PLK5-205ENST00000642079 1969 ntBASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 MYCNOS-205ENST00000641950 531 ntBASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 AC121338.2-201ENST00000622535 1744 ntBASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
AP4E1Q9UPM8 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 AC137761.2-201ENST00000561729 223 ntBASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 AC145350.3-201ENST00000569033 163 ntBASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
AP4E1Q9UPM8 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms