Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC39.77■■■■□ 3.96
SHROOM4Q9ULL8 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC39.76■■■■□ 3.96
SHROOM4Q9ULL8 AC012306.2-201ENST00000609350 630 ntBASIC39.76■■■■□ 3.96
SHROOM4Q9ULL8 REXO1L12P-201ENST00000622156 912 ntBASIC39.76■■■■□ 3.96
SHROOM4Q9ULL8 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC39.76■■■■□ 3.96
SHROOM4Q9ULL8 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC39.76■■■■□ 3.96
SHROOM4Q9ULL8 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC39.76■■■■□ 3.96
SHROOM4Q9ULL8 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC39.76■■■■□ 3.95
SHROOM4Q9ULL8 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC39.76■■■■□ 3.95
SHROOM4Q9ULL8 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC39.75■■■■□ 3.95
SHROOM4Q9ULL8 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC39.75■■■■□ 3.95
SHROOM4Q9ULL8 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC39.75■■■■□ 3.95
SHROOM4Q9ULL8 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC39.75■■■■□ 3.95
SHROOM4Q9ULL8 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC39.75■■■■□ 3.95
SHROOM4Q9ULL8 NME6-213ENST00000451657 871 ntTSL 2 BASIC39.75■■■■□ 3.95
SHROOM4Q9ULL8 AC008175.2-201ENST00000612840 297 ntBASIC39.75■■■■□ 3.95
SHROOM4Q9ULL8 AC120498.10-201ENST00000621827 505 ntBASIC39.75■■■■□ 3.95
SHROOM4Q9ULL8 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC39.74■■■■□ 3.95
SHROOM4Q9ULL8 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC39.74■■■■□ 3.95
SHROOM4Q9ULL8 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC39.74■■■■□ 3.95
SHROOM4Q9ULL8 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC39.74■■■■□ 3.95
SHROOM4Q9ULL8 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC39.74■■■■□ 3.95
SHROOM4Q9ULL8 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC39.74■■■■□ 3.95
SHROOM4Q9ULL8 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC39.74■■■■□ 3.95
SHROOM4Q9ULL8 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC39.74■■■■□ 3.95
SHROOM4Q9ULL8 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC39.74■■■■□ 3.95
SHROOM4Q9ULL8 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC39.74■■■■□ 3.95
SHROOM4Q9ULL8 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC39.74■■■■□ 3.95
SHROOM4Q9ULL8 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC39.73■■■■□ 3.95
SHROOM4Q9ULL8 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC39.73■■■■□ 3.95
SHROOM4Q9ULL8 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC39.73■■■■□ 3.95
SHROOM4Q9ULL8 FAM99A-202ENST00000538190 1989 ntBASIC39.73■■■■□ 3.95
SHROOM4Q9ULL8 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC39.73■■■■□ 3.95
SHROOM4Q9ULL8 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC39.73■■■■□ 3.95
SHROOM4Q9ULL8 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC39.73■■■■□ 3.95
SHROOM4Q9ULL8 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC39.72■■■■□ 3.95
SHROOM4Q9ULL8 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC39.72■■■■□ 3.95
SHROOM4Q9ULL8 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC39.72■■■■□ 3.95
SHROOM4Q9ULL8 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC39.72■■■■□ 3.95
SHROOM4Q9ULL8 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC39.72■■■■□ 3.95
SHROOM4Q9ULL8 PNMA6B-201ENST00000538162 1200 ntBASIC39.72■■■■□ 3.95
SHROOM4Q9ULL8 AC233702.5-201ENST00000584107 538 ntBASIC39.72■■■■□ 3.95
SHROOM4Q9ULL8 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC39.72■■■■□ 3.95
SHROOM4Q9ULL8 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC39.72■■■■□ 3.95
SHROOM4Q9ULL8 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC39.72■■■■□ 3.95
SHROOM4Q9ULL8 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC39.71■■■■□ 3.95
SHROOM4Q9ULL8 KRT18P21-201ENST00000515767 1272 ntBASIC39.71■■■■□ 3.95
SHROOM4Q9ULL8 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC39.71■■■■□ 3.95
SHROOM4Q9ULL8 RN7SL471P-201ENST00000580476 299 ntBASIC39.71■■■■□ 3.95
SHROOM4Q9ULL8 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC39.71■■■■□ 3.95
SHROOM4Q9ULL8 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC39.71■■■■□ 3.95
SHROOM4Q9ULL8 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC39.71■■■■□ 3.95
SHROOM4Q9ULL8 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC39.7■■■■□ 3.95
SHROOM4Q9ULL8 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC39.7■■■■□ 3.95
SHROOM4Q9ULL8 POU5F1P4-201ENST00000413175 1085 ntBASIC39.7■■■■□ 3.95
SHROOM4Q9ULL8 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC39.7■■■■□ 3.95
SHROOM4Q9ULL8 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC39.7■■■■□ 3.95
SHROOM4Q9ULL8 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC39.7■■■■□ 3.95
SHROOM4Q9ULL8 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC39.7■■■■□ 3.95
SHROOM4Q9ULL8 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC39.69■■■■□ 3.94
SHROOM4Q9ULL8 ABHD17AP6-201ENST00000458502 1044 ntBASIC39.69■■■■□ 3.94
SHROOM4Q9ULL8 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC39.69■■■■□ 3.94
SHROOM4Q9ULL8 AC097493.4-201ENST00000641197 219 ntBASIC39.69■■■■□ 3.94
SHROOM4Q9ULL8 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC39.69■■■■□ 3.94
SHROOM4Q9ULL8 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC39.69■■■■□ 3.94
SHROOM4Q9ULL8 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC39.69■■■■□ 3.94
SHROOM4Q9ULL8 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC39.69■■■■□ 3.94
SHROOM4Q9ULL8 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC39.68■■■■□ 3.94
SHROOM4Q9ULL8 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC39.68■■■■□ 3.94
SHROOM4Q9ULL8 KRT17P1-201ENST00000399211 1546 ntBASIC39.68■■■■□ 3.94
SHROOM4Q9ULL8 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC39.68■■■■□ 3.94
SHROOM4Q9ULL8 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC39.68■■■■□ 3.94
SHROOM4Q9ULL8 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC39.68■■■■□ 3.94
SHROOM4Q9ULL8 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC39.68■■■■□ 3.94
SHROOM4Q9ULL8 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC39.68■■■■□ 3.94
SHROOM4Q9ULL8 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC39.68■■■■□ 3.94
SHROOM4Q9ULL8 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC39.68■■■■□ 3.94
SHROOM4Q9ULL8 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC39.68■■■■□ 3.94
SHROOM4Q9ULL8 AC233263.1-201ENST00000578059 224 ntBASIC39.68■■■■□ 3.94
SHROOM4Q9ULL8 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC39.67■■■■□ 3.94
SHROOM4Q9ULL8 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC39.67■■■■□ 3.94
SHROOM4Q9ULL8 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC39.67■■■■□ 3.94
SHROOM4Q9ULL8 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC39.67■■■■□ 3.94
SHROOM4Q9ULL8 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC39.67■■■■□ 3.94
SHROOM4Q9ULL8 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC39.67■■■■□ 3.94
SHROOM4Q9ULL8 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC39.66■■■■□ 3.94
SHROOM4Q9ULL8 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC39.66■■■■□ 3.94
SHROOM4Q9ULL8 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC39.66■■■■□ 3.94
SHROOM4Q9ULL8 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC39.66■■■■□ 3.94
SHROOM4Q9ULL8 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC39.66■■■■□ 3.94
SHROOM4Q9ULL8 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC39.66■■■■□ 3.94
SHROOM4Q9ULL8 TK2-213ENST00000563369 882 ntTSL 5 BASIC39.66■■■■□ 3.94
SHROOM4Q9ULL8 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC39.66■■■■□ 3.94
SHROOM4Q9ULL8 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC39.66■■■■□ 3.94
SHROOM4Q9ULL8 C11orf96-202ENST00000528572 1834 ntBASIC39.66■■■■□ 3.94
SHROOM4Q9ULL8 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC39.66■■■■□ 3.94
SHROOM4Q9ULL8 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC39.65■■■■□ 3.94
SHROOM4Q9ULL8 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC39.65■■■■□ 3.94
SHROOM4Q9ULL8 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC39.65■■■■□ 3.94
SHROOM4Q9ULL8 RCN1P1-201ENST00000400413 996 ntBASIC39.65■■■■□ 3.94
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms