Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CISHQ9NSE2 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CISHQ9NSE2 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC22.19■■□□□ 1.14
CISHQ9NSE2 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
CISHQ9NSE2 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
CISHQ9NSE2 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC22.19■■□□□ 1.14
CISHQ9NSE2 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CISHQ9NSE2 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC22.19■■□□□ 1.14
CISHQ9NSE2 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC22.19■■□□□ 1.14
CISHQ9NSE2 TERF1P5-201ENST00000477545 1207 ntBASIC22.19■■□□□ 1.14
CISHQ9NSE2 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC22.19■■□□□ 1.14
CISHQ9NSE2 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC22.19■■□□□ 1.14
CISHQ9NSE2 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC22.19■■□□□ 1.14
CISHQ9NSE2 AL137784.2-201ENST00000607332 1000 ntBASIC22.19■■□□□ 1.14
CISHQ9NSE2 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CISHQ9NSE2 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC22.19■■□□□ 1.14
CISHQ9NSE2 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
CISHQ9NSE2 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC22.19■■□□□ 1.14
CISHQ9NSE2 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC22.19■■□□□ 1.14
CISHQ9NSE2 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
CISHQ9NSE2 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CISHQ9NSE2 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CISHQ9NSE2 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
CISHQ9NSE2 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC22.18■■□□□ 1.14
CISHQ9NSE2 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CISHQ9NSE2 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
CISHQ9NSE2 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC22.18■■□□□ 1.14
CISHQ9NSE2 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CISHQ9NSE2 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
CISHQ9NSE2 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC22.18■■□□□ 1.14
CISHQ9NSE2 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
CISHQ9NSE2 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CISHQ9NSE2 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CISHQ9NSE2 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CISHQ9NSE2 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CISHQ9NSE2 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC22.18■■□□□ 1.14
CISHQ9NSE2 AC004911.1-201ENST00000416316 871 ntBASIC22.18■■□□□ 1.14
CISHQ9NSE2 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC22.18■■□□□ 1.14
CISHQ9NSE2 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CISHQ9NSE2 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC22.18■■□□□ 1.14
CISHQ9NSE2 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
CISHQ9NSE2 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
CISHQ9NSE2 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
CISHQ9NSE2 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
CISHQ9NSE2 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
CISHQ9NSE2 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CISHQ9NSE2 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC22.17■■□□□ 1.14
CISHQ9NSE2 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
CISHQ9NSE2 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CISHQ9NSE2 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC22.17■■□□□ 1.14
CISHQ9NSE2 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CISHQ9NSE2 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CISHQ9NSE2 DUX4L16-201ENST00000555130 1264 ntBASIC22.17■■□□□ 1.14
CISHQ9NSE2 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC22.17■■□□□ 1.14
CISHQ9NSE2 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC22.17■■□□□ 1.14
CISHQ9NSE2 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CISHQ9NSE2 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC22.17■■□□□ 1.14
CISHQ9NSE2 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CISHQ9NSE2 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CISHQ9NSE2 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
CISHQ9NSE2 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CISHQ9NSE2 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CISHQ9NSE2 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CISHQ9NSE2 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CISHQ9NSE2 AC091799.1-201ENST00000422823 811 ntBASIC22.16■■□□□ 1.14
CISHQ9NSE2 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC22.16■■□□□ 1.14
CISHQ9NSE2 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CISHQ9NSE2 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC22.16■■□□□ 1.14
CISHQ9NSE2 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC22.16■■□□□ 1.14
CISHQ9NSE2 AC092666.2-201ENST00000613287 246 ntBASIC22.16■■□□□ 1.14
CISHQ9NSE2 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
CISHQ9NSE2 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
CISHQ9NSE2 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
CISHQ9NSE2 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CISHQ9NSE2 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CISHQ9NSE2 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC22.15■■□□□ 1.14
CISHQ9NSE2 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC22.15■■□□□ 1.14
CISHQ9NSE2 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC22.15■■□□□ 1.14
CISHQ9NSE2 BMP1-204ENST00000397814 836 ntTSL 4 BASIC22.15■■□□□ 1.14
CISHQ9NSE2 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC22.15■■□□□ 1.14
CISHQ9NSE2 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CISHQ9NSE2 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC22.15■■□□□ 1.14
CISHQ9NSE2 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CISHQ9NSE2 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC22.15■■□□□ 1.14
CISHQ9NSE2 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC22.15■■□□□ 1.14
CISHQ9NSE2 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
CISHQ9NSE2 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
CISHQ9NSE2 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CISHQ9NSE2 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CISHQ9NSE2 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CISHQ9NSE2 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
CISHQ9NSE2 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CISHQ9NSE2 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC22.14■■□□□ 1.13
CISHQ9NSE2 PTPA-214ENST00000423100 988 ntTSL 2 BASIC22.14■■□□□ 1.13
CISHQ9NSE2 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CISHQ9NSE2 CD44-222ENST00000526025 1052 ntTSL 2 BASIC22.14■■□□□ 1.13
CISHQ9NSE2 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CISHQ9NSE2 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
CISHQ9NSE2 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CISHQ9NSE2 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms