Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 DUSP5P2-201ENST00000426873 1033 ntBASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 AC003102.1-202ENST00000563394 1796 ntBASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TM9SF3Q9HD45 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 ESRRAP1-201ENST00000400596 1257 ntBASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TM9SF3Q9HD45 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.77■□□□□ 0.92
TM9SF3Q9HD45 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.77■□□□□ 0.91
TM9SF3Q9HD45 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TM9SF3Q9HD45 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TM9SF3Q9HD45 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TM9SF3Q9HD45 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TM9SF3Q9HD45 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
TM9SF3Q9HD45 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
TM9SF3Q9HD45 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
TM9SF3Q9HD45 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TM9SF3Q9HD45 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.75■□□□□ 0.91
TM9SF3Q9HD45 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms