Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
RSPO3Q9BXY4 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RSPO3Q9BXY4 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RSPO3Q9BXY4 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
RSPO3Q9BXY4 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
RSPO3Q9BXY4 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
RSPO3Q9BXY4 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 MIR638-201ENST00000385237 100 ntBASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 RARRES2P11-201ENST00000635158 484 ntBASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RSPO3Q9BXY4 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.14■□□□□ 0.66
RSPO3Q9BXY4 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.14■□□□□ 0.66
RSPO3Q9BXY4 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.14■□□□□ 0.66
RSPO3Q9BXY4 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
RSPO3Q9BXY4 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.14■□□□□ 0.66
RSPO3Q9BXY4 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 IRS3P-201ENST00000223076 1006 ntBASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 AL121603.2-201ENST00000557373 2117 ntBASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 AP004607.4-201ENST00000530158 1459 ntBASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 AL162377.1-201ENST00000618844 1793 ntBASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RSPO3Q9BXY4 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 AC020907.5-201ENST00000624372 1936 ntBASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 AC011484.1-201ENST00000377652 1995 ntBASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 AL512408.1-201ENST00000569378 2000 ntBASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 PCDHAC2-203ENST00000615316 3011 ntBASIC19.13■□□□□ 0.65
RSPO3Q9BXY4 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 FP700111.2-201ENST00000619190 1892 ntBASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 AC027612.3-201ENST00000413684 1047 ntBASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.12■□□□□ 0.65
RSPO3Q9BXY4 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
RSPO3Q9BXY4 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RSPO3Q9BXY4 KRT87P-202ENST00000534226 1464 ntBASIC19.11■□□□□ 0.65
RSPO3Q9BXY4 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.11■□□□□ 0.65
RSPO3Q9BXY4 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.11■□□□□ 0.65
RSPO3Q9BXY4 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RSPO3Q9BXY4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms