Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 NUDT16P1-203ENST00000513809 620 ntBASIC21.48■■□□□ 1.03
TTC28Q96AY4 AC008175.2-201ENST00000612840 297 ntBASIC21.48■■□□□ 1.03
TTC28Q96AY4 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TTC28Q96AY4 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TTC28Q96AY4 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TTC28Q96AY4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.48■■□□□ 1.03
TTC28Q96AY4 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TTC28Q96AY4 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.47■■□□□ 1.03
TTC28Q96AY4 COPS8-203ENST00000409334 794 ntTSL 5 BASIC21.47■■□□□ 1.03
TTC28Q96AY4 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.47■■□□□ 1.03
TTC28Q96AY4 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.47■■□□□ 1.03
TTC28Q96AY4 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC21.47■■□□□ 1.03
TTC28Q96AY4 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC21.47■■□□□ 1.03
TTC28Q96AY4 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TTC28Q96AY4 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
TTC28Q96AY4 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
TTC28Q96AY4 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TTC28Q96AY4 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.47■■□□□ 1.03
TTC28Q96AY4 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TTC28Q96AY4 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TTC28Q96AY4 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TTC28Q96AY4 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TTC28Q96AY4 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
TTC28Q96AY4 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TTC28Q96AY4 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TTC28Q96AY4 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.46■■□□□ 1.03
TTC28Q96AY4 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.46■■□□□ 1.03
TTC28Q96AY4 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
TTC28Q96AY4 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.46■■□□□ 1.03
TTC28Q96AY4 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TTC28Q96AY4 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
TTC28Q96AY4 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TTC28Q96AY4 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.46■■□□□ 1.03
TTC28Q96AY4 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
TTC28Q96AY4 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TTC28Q96AY4 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TTC28Q96AY4 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TTC28Q96AY4 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.45■■□□□ 1.02
TTC28Q96AY4 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TTC28Q96AY4 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC21.45■■□□□ 1.02
TTC28Q96AY4 AC073195.1-201ENST00000607241 877 ntBASIC21.45■■□□□ 1.02
TTC28Q96AY4 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TTC28Q96AY4 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.45■■□□□ 1.02
TTC28Q96AY4 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TTC28Q96AY4 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TTC28Q96AY4 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TTC28Q96AY4 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TTC28Q96AY4 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
TTC28Q96AY4 AC027702.1-201ENST00000563810 1770 ntBASIC21.44■■□□□ 1.02
TTC28Q96AY4 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TTC28Q96AY4 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.44■■□□□ 1.02
TTC28Q96AY4 AL031133.1-201ENST00000406807 723 ntBASIC21.44■■□□□ 1.02
TTC28Q96AY4 AK4P3-201ENST00000418260 669 ntBASIC21.44■■□□□ 1.02
TTC28Q96AY4 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.44■■□□□ 1.02
TTC28Q96AY4 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TTC28Q96AY4 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TTC28Q96AY4 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
TTC28Q96AY4 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TTC28Q96AY4 AP000347.1-202ENST00000435868 847 ntBASIC21.44■■□□□ 1.02
TTC28Q96AY4 AC063952.2-201ENST00000498792 1227 ntBASIC21.44■■□□□ 1.02
TTC28Q96AY4 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
TTC28Q96AY4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC21.44■■□□□ 1.02
TTC28Q96AY4 CLN6-204ENST00000564752 900 ntTSL 3 BASIC21.44■■□□□ 1.02
TTC28Q96AY4 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
TTC28Q96AY4 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TTC28Q96AY4 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TTC28Q96AY4 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
TTC28Q96AY4 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.43■■□□□ 1.02
TTC28Q96AY4 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.43■■□□□ 1.02
TTC28Q96AY4 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
TTC28Q96AY4 FAM197Y1-201ENST00000421178 764 ntBASIC21.43■■□□□ 1.02
TTC28Q96AY4 HCG4P8-203ENST00000443049 980 ntBASIC21.43■■□□□ 1.02
TTC28Q96AY4 KRT18P16-201ENST00000510337 1294 ntBASIC21.43■■□□□ 1.02
TTC28Q96AY4 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.43■■□□□ 1.02
TTC28Q96AY4 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.43■■□□□ 1.02
TTC28Q96AY4 REXO1L10P-201ENST00000615707 1290 ntBASIC21.43■■□□□ 1.02
TTC28Q96AY4 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
TTC28Q96AY4 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
TTC28Q96AY4 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.43■■□□□ 1.02
TTC28Q96AY4 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.43■■□□□ 1.02
TTC28Q96AY4 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.43■■□□□ 1.02
TTC28Q96AY4 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TTC28Q96AY4 AC022616.7-201ENST00000525383 220 ntBASIC21.43■■□□□ 1.02
TTC28Q96AY4 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TTC28Q96AY4 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC21.43■■□□□ 1.02
TTC28Q96AY4 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.42■■□□□ 1.02
TTC28Q96AY4 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
TTC28Q96AY4 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TTC28Q96AY4 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC21.42■■□□□ 1.02
TTC28Q96AY4 PP7080-204ENST00000510714 601 ntTSL 3 BASIC21.42■■□□□ 1.02
TTC28Q96AY4 FITM1-202ENST00000559294 800 ntBASIC21.42■■□□□ 1.02
TTC28Q96AY4 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.42■■□□□ 1.02
TTC28Q96AY4 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.42■■□□□ 1.02
TTC28Q96AY4 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TTC28Q96AY4 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TTC28Q96AY4 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
TTC28Q96AY4 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.42■■□□□ 1.02
TTC28Q96AY4 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TTC28Q96AY4 KRT18P68-201ENST00000392293 1000 ntBASIC21.41■■□□□ 1.02
TTC28Q96AY4 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms