Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 EP400NL-214ENST00000641289 2402 ntBASIC6.37□□□□□ -1.39
SYNE1Q8NF91 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 RHEB-204ENST00000472642 900 ntTSL 3 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 RARRES2P4-201ENST00000514074 484 ntBASIC6.37□□□□□ -1.39
SYNE1Q8NF91 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 AC008550.1-201ENST00000511500 884 ntBASIC6.37□□□□□ -1.39
SYNE1Q8NF91 AC083880.1-201ENST00000608266 535 ntBASIC6.37□□□□□ -1.39
SYNE1Q8NF91 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 PRORSD1P-201ENST00000295112 541 ntBASIC6.36□□□□□ -1.39
SYNE1Q8NF91 SERPINH1P1-201ENST00000419794 1249 ntBASIC6.36□□□□□ -1.39
SYNE1Q8NF91 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 INO80E-214ENST00000620599 515 ntTSL 2 BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 AL596275.1-201ENST00000423464 877 ntBASIC6.36□□□□□ -1.39
SYNE1Q8NF91 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SYNE1Q8NF91 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms