Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 AP005212.1-201ENST00000581547 1997 ntBASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DEPDC4Q8N2C3 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 AC006128.1-201ENST00000624704 1661 ntBASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 AL034346.1-201ENST00000568244 1277 ntBASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 AC087239.1-201ENST00000622671 572 ntBASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
DEPDC4Q8N2C3 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 IRS3P-201ENST00000223076 1006 ntBASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
DEPDC4Q8N2C3 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 AC007952.6-201ENST00000573168 2673 ntBASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 AC003957.1-201ENST00000625108 2673 ntBASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
DEPDC4Q8N2C3 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
DEPDC4Q8N2C3 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms