Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF39Q86UA1 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF39Q86UA1 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.5■■□□□ 1.03
PRPF39Q86UA1 AC073111.5-205ENST00000641717 521 ntBASIC21.5■■□□□ 1.03
PRPF39Q86UA1 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF39Q86UA1 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF39Q86UA1 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.5■■□□□ 1.03
PRPF39Q86UA1 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
PRPF39Q86UA1 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 CDCA4P2-201ENST00000441182 718 ntBASIC21.49■■□□□ 1.03
PRPF39Q86UA1 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 KRT87P-202ENST00000534226 1464 ntBASIC21.49■■□□□ 1.03
PRPF39Q86UA1 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRPF39Q86UA1 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
PRPF39Q86UA1 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
PRPF39Q86UA1 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.48■■□□□ 1.03
PRPF39Q86UA1 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.48■■□□□ 1.03
PRPF39Q86UA1 AC026185.1-201ENST00000445748 174 ntBASIC21.48■■□□□ 1.03
PRPF39Q86UA1 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.48■■□□□ 1.03
PRPF39Q86UA1 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.48■■□□□ 1.03
PRPF39Q86UA1 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.48■■□□□ 1.03
PRPF39Q86UA1 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.48■■□□□ 1.03
PRPF39Q86UA1 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF39Q86UA1 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.48■■□□□ 1.03
PRPF39Q86UA1 AL157384.1-201ENST00000445995 2473 ntBASIC21.48■■□□□ 1.03
PRPF39Q86UA1 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PRPF39Q86UA1 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF39Q86UA1 AC073130.3-201ENST00000624389 2278 ntBASIC21.46■■□□□ 1.03
PRPF39Q86UA1 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF39Q86UA1 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF39Q86UA1 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF39Q86UA1 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.46■■□□□ 1.03
PRPF39Q86UA1 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.46■■□□□ 1.03
PRPF39Q86UA1 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.46■■□□□ 1.03
PRPF39Q86UA1 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.46■■□□□ 1.03
PRPF39Q86UA1 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF39Q86UA1 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF39Q86UA1 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF39Q86UA1 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF39Q86UA1 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF39Q86UA1 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.46■■□□□ 1.03
PRPF39Q86UA1 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF39Q86UA1 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
PRPF39Q86UA1 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
PRPF39Q86UA1 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PRPF39Q86UA1 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PRPF39Q86UA1 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PRPF39Q86UA1 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.45■■□□□ 1.02
PRPF39Q86UA1 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.45■■□□□ 1.02
PRPF39Q86UA1 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.45■■□□□ 1.02
PRPF39Q86UA1 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.45■■□□□ 1.02
PRPF39Q86UA1 AC104187.1-201ENST00000607510 612 ntBASIC21.45■■□□□ 1.02
PRPF39Q86UA1 AC011767.1-201ENST00000617410 1153 ntBASIC21.45■■□□□ 1.02
PRPF39Q86UA1 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PRPF39Q86UA1 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
PRPF39Q86UA1 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PRPF39Q86UA1 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.45■■□□□ 1.02
PRPF39Q86UA1 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
PRPF39Q86UA1 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PRPF39Q86UA1 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PRPF39Q86UA1 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.45■■□□□ 1.02
PRPF39Q86UA1 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PRPF39Q86UA1 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PRPF39Q86UA1 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
PRPF39Q86UA1 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PRPF39Q86UA1 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms