Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.27■□□□□ 0.68
RNF4P78317 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF4P78317 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF4P78317 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
RNF4P78317 AC091799.1-201ENST00000422823 811 ntBASIC19.27■□□□□ 0.68
RNF4P78317 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF4P78317 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF4P78317 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.27■□□□□ 0.68
RNF4P78317 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF4P78317 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF4P78317 AL591742.1-201ENST00000604433 565 ntBASIC19.27■□□□□ 0.68
RNF4P78317 AL050303.2-201ENST00000619798 666 ntBASIC19.27■□□□□ 0.68
RNF4P78317 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF4P78317 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.27■□□□□ 0.68
RNF4P78317 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
RNF4P78317 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF4P78317 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RNF4P78317 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
RNF4P78317 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
RNF4P78317 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RNF4P78317 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
RNF4P78317 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.27■□□□□ 0.67
RNF4P78317 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF4P78317 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF4P78317 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
RNF4P78317 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.26■□□□□ 0.67
RNF4P78317 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.26■□□□□ 0.67
RNF4P78317 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF4P78317 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF4P78317 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF4P78317 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.26■□□□□ 0.67
RNF4P78317 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.26■□□□□ 0.67
RNF4P78317 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.26■□□□□ 0.67
RNF4P78317 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.26■□□□□ 0.67
RNF4P78317 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.26■□□□□ 0.67
RNF4P78317 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF4P78317 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF4P78317 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
RNF4P78317 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF4P78317 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RNF4P78317 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.25■□□□□ 0.67
RNF4P78317 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
RNF4P78317 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.25■□□□□ 0.67
RNF4P78317 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
RNF4P78317 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.25■□□□□ 0.67
RNF4P78317 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF4P78317 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF4P78317 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF4P78317 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.25■□□□□ 0.67
RNF4P78317 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
RNF4P78317 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.25■□□□□ 0.67
RNF4P78317 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.25■□□□□ 0.67
RNF4P78317 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.25■□□□□ 0.67
RNF4P78317 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.25■□□□□ 0.67
RNF4P78317 AL162412.1-201ENST00000567129 965 ntBASIC19.25■□□□□ 0.67
RNF4P78317 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.25■□□□□ 0.67
RNF4P78317 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
RNF4P78317 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RNF4P78317 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.25■□□□□ 0.67
RNF4P78317 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF4P78317 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RNF4P78317 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
RNF4P78317 CYP2T1P-201ENST00000432607 1285 ntBASIC19.24■□□□□ 0.67
RNF4P78317 NCF1B-203ENST00000435988 1254 ntBASIC19.24■□□□□ 0.67
RNF4P78317 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
RNF4P78317 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.24■□□□□ 0.67
RNF4P78317 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.24■□□□□ 0.67
RNF4P78317 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.24■□□□□ 0.67
RNF4P78317 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF4P78317 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF4P78317 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF4P78317 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RNF4P78317 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.24■□□□□ 0.67
RNF4P78317 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
RNF4P78317 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF4P78317 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RNF4P78317 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF4P78317 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.23■□□□□ 0.67
RNF4P78317 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.23■□□□□ 0.67
RNF4P78317 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF4P78317 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF4P78317 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF4P78317 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.23■□□□□ 0.67
RNF4P78317 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF4P78317 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.23■□□□□ 0.67
RNF4P78317 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.23■□□□□ 0.67
RNF4P78317 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
RNF4P78317 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RNF4P78317 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
RNF4P78317 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF4P78317 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF4P78317 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF4P78317 ID1-201ENST00000376105 1233 ntBASIC19.22■□□□□ 0.67
RNF4P78317 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF4P78317 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.22■□□□□ 0.67
RNF4P78317 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.22■□□□□ 0.67
RNF4P78317 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.22■□□□□ 0.67
RNF4P78317 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.22■□□□□ 0.67
RNF4P78317 AC133552.2-202ENST00000575694 574 ntBASIC19.22■□□□□ 0.67
RNF4P78317 AC069236.1-201ENST00000604339 616 ntBASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms