Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.71■■□□□ 1.07
HDAC4P56524 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
HDAC4P56524 UBE2DNL-204ENST00000602536 740 ntBASIC21.71■■□□□ 1.07
HDAC4P56524 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.71■■□□□ 1.07
HDAC4P56524 AC120498.10-201ENST00000621827 505 ntBASIC21.71■■□□□ 1.07
HDAC4P56524 RARRES2P11-201ENST00000635158 484 ntBASIC21.71■■□□□ 1.07
HDAC4P56524 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.71■■□□□ 1.07
HDAC4P56524 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HDAC4P56524 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HDAC4P56524 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HDAC4P56524 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HDAC4P56524 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
HDAC4P56524 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HDAC4P56524 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.7■■□□□ 1.06
HDAC4P56524 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HDAC4P56524 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.7■■□□□ 1.06
HDAC4P56524 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.7■■□□□ 1.06
HDAC4P56524 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.7■■□□□ 1.06
HDAC4P56524 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.7■■□□□ 1.06
HDAC4P56524 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.7■■□□□ 1.06
HDAC4P56524 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HDAC4P56524 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.7■■□□□ 1.06
HDAC4P56524 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HDAC4P56524 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
HDAC4P56524 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.69■■□□□ 1.06
HDAC4P56524 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HDAC4P56524 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HDAC4P56524 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.69■■□□□ 1.06
HDAC4P56524 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.69■■□□□ 1.06
HDAC4P56524 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.69■■□□□ 1.06
HDAC4P56524 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HDAC4P56524 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HDAC4P56524 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
HDAC4P56524 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HDAC4P56524 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC4P56524 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC4P56524 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC4P56524 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC4P56524 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC4P56524 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC4P56524 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.68■■□□□ 1.06
HDAC4P56524 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC4P56524 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.68■■□□□ 1.06
HDAC4P56524 SLC7A5P1-201ENST00000568957 537 ntBASIC21.68■■□□□ 1.06
HDAC4P56524 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.68■■□□□ 1.06
HDAC4P56524 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.68■■□□□ 1.06
HDAC4P56524 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC4P56524 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
HDAC4P56524 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
HDAC4P56524 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.68■■□□□ 1.06
HDAC4P56524 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
HDAC4P56524 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.68■■□□□ 1.06
HDAC4P56524 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.68■■□□□ 1.06
HDAC4P56524 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
HDAC4P56524 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
HDAC4P56524 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDAC4P56524 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDAC4P56524 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDAC4P56524 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HDAC4P56524 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HDAC4P56524 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.67■■□□□ 1.06
HDAC4P56524 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HDAC4P56524 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDAC4P56524 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.67■■□□□ 1.06
HDAC4P56524 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.67■■□□□ 1.06
HDAC4P56524 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.67■■□□□ 1.06
HDAC4P56524 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.67■■□□□ 1.06
HDAC4P56524 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDAC4P56524 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDAC4P56524 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.66■■□□□ 1.06
HDAC4P56524 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
HDAC4P56524 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.66■■□□□ 1.06
HDAC4P56524 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HDAC4P56524 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HDAC4P56524 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.66■■□□□ 1.06
HDAC4P56524 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HDAC4P56524 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
HDAC4P56524 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
HDAC4P56524 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HDAC4P56524 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HDAC4P56524 MYCNOS-205ENST00000641950 531 ntBASIC21.66■■□□□ 1.06
HDAC4P56524 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HDAC4P56524 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HDAC4P56524 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HDAC4P56524 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.66■■□□□ 1.06
HDAC4P56524 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
HDAC4P56524 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
HDAC4P56524 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HDAC4P56524 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HDAC4P56524 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HDAC4P56524 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
HDAC4P56524 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.65■■□□□ 1.06
HDAC4P56524 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.65■■□□□ 1.06
HDAC4P56524 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
HDAC4P56524 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.65■■□□□ 1.06
HDAC4P56524 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
HDAC4P56524 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.65■■□□□ 1.06
HDAC4P56524 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.65■■□□□ 1.06
HDAC4P56524 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HDAC4P56524 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms