Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
LIMK1P53667 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMK1P53667 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
LIMK1P53667 AC012618.2-201ENST00000428058 849 ntBASIC20.63■□□□□ 0.89
LIMK1P53667 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.63■□□□□ 0.89
LIMK1P53667 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
LIMK1P53667 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.63■□□□□ 0.89
LIMK1P53667 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.63■□□□□ 0.89
LIMK1P53667 AC127496.7-201ENST00000625110 1798 ntBASIC20.63■□□□□ 0.89
LIMK1P53667 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.63■□□□□ 0.89
LIMK1P53667 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIMK1P53667 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIMK1P53667 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMK1P53667 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LIMK1P53667 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LIMK1P53667 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIMK1P53667 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
LIMK1P53667 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMK1P53667 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.62■□□□□ 0.89
LIMK1P53667 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.62■□□□□ 0.89
LIMK1P53667 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.62■□□□□ 0.89
LIMK1P53667 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
LIMK1P53667 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.62■□□□□ 0.89
LIMK1P53667 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMK1P53667 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMK1P53667 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMK1P53667 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMK1P53667 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMK1P53667 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.61■□□□□ 0.89
LIMK1P53667 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.61■□□□□ 0.89
LIMK1P53667 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
LIMK1P53667 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
LIMK1P53667 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LIMK1P53667 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LIMK1P53667 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.61■□□□□ 0.89
LIMK1P53667 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.61■□□□□ 0.89
LIMK1P53667 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.61■□□□□ 0.89
LIMK1P53667 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.61■□□□□ 0.89
LIMK1P53667 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.61■□□□□ 0.89
LIMK1P53667 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
LIMK1P53667 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMK1P53667 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMK1P53667 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMK1P53667 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LIMK1P53667 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMK1P53667 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMK1P53667 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMK1P53667 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMK1P53667 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMK1P53667 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LIMK1P53667 C1orf229-201ENST00000623686 2258 ntBASIC20.6■□□□□ 0.89
LIMK1P53667 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMK1P53667 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
LIMK1P53667 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
LIMK1P53667 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMK1P53667 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.6■□□□□ 0.89
LIMK1P53667 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMK1P53667 PNMA6B-201ENST00000538162 1200 ntBASIC20.6■□□□□ 0.89
LIMK1P53667 AC233702.5-201ENST00000584107 538 ntBASIC20.6■□□□□ 0.89
LIMK1P53667 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LIMK1P53667 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.6■□□□□ 0.89
LIMK1P53667 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.6■□□□□ 0.89
LIMK1P53667 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMK1P53667 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMK1P53667 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
LIMK1P53667 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
LIMK1P53667 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.59■□□□□ 0.89
LIMK1P53667 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LIMK1P53667 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMK1P53667 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMK1P53667 AP006587.3-201ENST00000525742 1516 ntBASIC20.59■□□□□ 0.89
LIMK1P53667 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
LIMK1P53667 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
LIMK1P53667 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
LIMK1P53667 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.59■□□□□ 0.89
LIMK1P53667 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.59■□□□□ 0.89
LIMK1P53667 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.59■□□□□ 0.89
LIMK1P53667 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.59■□□□□ 0.89
LIMK1P53667 AC100791.3-201ENST00000617619 330 ntBASIC20.59■□□□□ 0.89
LIMK1P53667 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.59■□□□□ 0.89
LIMK1P53667 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.59■□□□□ 0.89
LIMK1P53667 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
LIMK1P53667 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
LIMK1P53667 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
LIMK1P53667 ECEL1P1-201ENST00000373592 1742 ntBASIC20.58■□□□□ 0.89
LIMK1P53667 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIMK1P53667 KRT17P1-201ENST00000399211 1546 ntBASIC20.58■□□□□ 0.89
LIMK1P53667 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIMK1P53667 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LIMK1P53667 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LIMK1P53667 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIMK1P53667 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LIMK1P53667 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.58■□□□□ 0.89
LIMK1P53667 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.58■□□□□ 0.89
LIMK1P53667 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.58■□□□□ 0.89
LIMK1P53667 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIMK1P53667 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
LIMK1P53667 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMK1P53667 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.57■□□□□ 0.88
LIMK1P53667 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms