Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NEK3P51956 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
NEK3P51956 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NEK3P51956 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NEK3P51956 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
NEK3P51956 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NEK3P51956 AC010141.2-201ENST00000452426 721 ntBASIC21.38■■□□□ 1.01
NEK3P51956 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
NEK3P51956 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
NEK3P51956 EEF1DP3-203ENST00000566025 782 ntBASIC21.38■■□□□ 1.01
NEK3P51956 AC011767.1-201ENST00000617410 1153 ntBASIC21.38■■□□□ 1.01
NEK3P51956 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NEK3P51956 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NEK3P51956 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NEK3P51956 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
NEK3P51956 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.38■■□□□ 1.01
NEK3P51956 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
NEK3P51956 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NEK3P51956 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NEK3P51956 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.38■■□□□ 1.01
NEK3P51956 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
NEK3P51956 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.38■■□□□ 1.01
NEK3P51956 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NEK3P51956 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
NEK3P51956 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NEK3P51956 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NEK3P51956 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NEK3P51956 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NEK3P51956 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NEK3P51956 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NEK3P51956 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.37■■□□□ 1.01
NEK3P51956 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.37■■□□□ 1.01
NEK3P51956 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.37■■□□□ 1.01
NEK3P51956 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.37■■□□□ 1.01
NEK3P51956 AC053503.5-201ENST00000601508 636 ntBASIC21.37■■□□□ 1.01
NEK3P51956 UBE2DNL-204ENST00000602536 740 ntBASIC21.37■■□□□ 1.01
NEK3P51956 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NEK3P51956 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NEK3P51956 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.37■■□□□ 1.01
NEK3P51956 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NEK3P51956 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
NEK3P51956 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NEK3P51956 LINC01521-201ENST00000504184 1943 ntBASIC21.37■■□□□ 1.01
NEK3P51956 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NEK3P51956 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NEK3P51956 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.36■■□□□ 1.01
NEK3P51956 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.36■■□□□ 1.01
NEK3P51956 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.36■■□□□ 1.01
NEK3P51956 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
NEK3P51956 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
NEK3P51956 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.36■■□□□ 1.01
NEK3P51956 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.36■■□□□ 1.01
NEK3P51956 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.36■■□□□ 1.01
NEK3P51956 CDCA4P2-201ENST00000441182 718 ntBASIC21.36■■□□□ 1.01
NEK3P51956 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.36■■□□□ 1.01
NEK3P51956 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
NEK3P51956 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
NEK3P51956 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
NEK3P51956 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
NEK3P51956 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.36■■□□□ 1.01
NEK3P51956 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
NEK3P51956 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.36■■□□□ 1.01
NEK3P51956 RNF165-205ENST00000588679 2904 ntBASIC21.35■■□□□ 1.01
NEK3P51956 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NEK3P51956 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
NEK3P51956 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
NEK3P51956 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
NEK3P51956 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NEK3P51956 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
NEK3P51956 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.35■■□□□ 1.01
NEK3P51956 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.35■■□□□ 1.01
NEK3P51956 AC092667.1-201ENST00000434301 2586 ntBASIC21.35■■□□□ 1.01
NEK3P51956 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NEK3P51956 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
NEK3P51956 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.35■■□□□ 1.01
NEK3P51956 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.35■■□□□ 1.01
NEK3P51956 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.35■■□□□ 1.01
NEK3P51956 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NEK3P51956 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NEK3P51956 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.35■■□□□ 1.01
NEK3P51956 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
NEK3P51956 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
NEK3P51956 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
NEK3P51956 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NEK3P51956 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NEK3P51956 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.34■■□□□ 1.01
NEK3P51956 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NEK3P51956 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
NEK3P51956 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
NEK3P51956 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NEK3P51956 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.34■■□□□ 1.01
NEK3P51956 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.34■■□□□ 1.01
NEK3P51956 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.34■■□□□ 1.01
NEK3P51956 MFSD11-216ENST00000590393 1141 ntBASIC21.34■■□□□ 1.01
NEK3P51956 RAP2CP1-201ENST00000605103 478 ntBASIC21.34■■□□□ 1.01
NEK3P51956 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NEK3P51956 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NEK3P51956 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NEK3P51956 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NEK3P51956 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms