Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.51■□□□□ 0.71
SOX3P41225 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.51■□□□□ 0.71
SOX3P41225 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.51■□□□□ 0.71
SOX3P41225 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.51■□□□□ 0.71
SOX3P41225 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
SOX3P41225 AC244015.2-201ENST00000616358 1861 ntBASIC19.51■□□□□ 0.71
SOX3P41225 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX3P41225 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX3P41225 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX3P41225 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX3P41225 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SOX3P41225 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX3P41225 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.51■□□□□ 0.71
SOX3P41225 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX3P41225 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SOX3P41225 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.5■□□□□ 0.71
SOX3P41225 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SOX3P41225 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SOX3P41225 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.5■□□□□ 0.71
SOX3P41225 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SOX3P41225 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SOX3P41225 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
SOX3P41225 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SOX3P41225 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.5■□□□□ 0.71
SOX3P41225 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SOX3P41225 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SOX3P41225 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.5■□□□□ 0.71
SOX3P41225 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.5■□□□□ 0.71
SOX3P41225 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SOX3P41225 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SOX3P41225 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SOX3P41225 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SOX3P41225 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SOX3P41225 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SOX3P41225 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
SOX3P41225 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SOX3P41225 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SOX3P41225 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SOX3P41225 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SOX3P41225 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.49■□□□□ 0.71
SOX3P41225 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.49■□□□□ 0.71
SOX3P41225 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.49■□□□□ 0.71
SOX3P41225 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.49■□□□□ 0.71
SOX3P41225 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.49■□□□□ 0.71
SOX3P41225 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SOX3P41225 AC011767.1-201ENST00000617410 1153 ntBASIC19.49■□□□□ 0.71
SOX3P41225 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SOX3P41225 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SOX3P41225 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SOX3P41225 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SOX3P41225 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SOX3P41225 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SOX3P41225 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.49■□□□□ 0.71
SOX3P41225 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
SOX3P41225 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SOX3P41225 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SOX3P41225 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.48■□□□□ 0.71
SOX3P41225 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SOX3P41225 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SOX3P41225 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SOX3P41225 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SOX3P41225 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SOX3P41225 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SOX3P41225 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SOX3P41225 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SOX3P41225 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.48■□□□□ 0.71
SOX3P41225 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
SOX3P41225 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SOX3P41225 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.48■□□□□ 0.71
SOX3P41225 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.48■□□□□ 0.71
SOX3P41225 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.48■□□□□ 0.71
SOX3P41225 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SOX3P41225 AC073111.5-205ENST00000641717 521 ntBASIC19.48■□□□□ 0.71
SOX3P41225 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SOX3P41225 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SOX3P41225 AF106564.1-201ENST00000607058 2553 ntBASIC19.48■□□□□ 0.71
SOX3P41225 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SOX3P41225 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SOX3P41225 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SOX3P41225 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SOX3P41225 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SOX3P41225 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.47■□□□□ 0.71
SOX3P41225 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SOX3P41225 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.47■□□□□ 0.71
SOX3P41225 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SOX3P41225 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.47■□□□□ 0.71
SOX3P41225 MFSD11-216ENST00000590393 1141 ntBASIC19.47■□□□□ 0.71
SOX3P41225 MYCNOS-205ENST00000641950 531 ntBASIC19.47■□□□□ 0.71
SOX3P41225 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SOX3P41225 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.47■□□□□ 0.71
SOX3P41225 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SOX3P41225 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.47■□□□□ 0.71
SOX3P41225 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.47■□□□□ 0.71
SOX3P41225 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SOX3P41225 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SOX3P41225 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SOX3P41225 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.46■□□□□ 0.71
SOX3P41225 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.46■□□□□ 0.71
SOX3P41225 KRT18P20-201ENST00000548986 1279 ntBASIC19.46■□□□□ 0.71
SOX3P41225 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms