Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 KRT18P68-201ENST00000392293 1000 ntBASIC26.53■■□□□ 1.84
COL5A3P25940 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC26.53■■□□□ 1.84
COL5A3P25940 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL5A3P25940 HES2-205ENST00000487437 968 ntTSL 3 BASIC26.53■■□□□ 1.84
COL5A3P25940 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
COL5A3P25940 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC26.53■■□□□ 1.84
COL5A3P25940 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
COL5A3P25940 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
COL5A3P25940 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
COL5A3P25940 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC26.52■■□□□ 1.84
COL5A3P25940 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC26.52■■□□□ 1.84
COL5A3P25940 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC26.52■■□□□ 1.84
COL5A3P25940 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
COL5A3P25940 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
COL5A3P25940 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC26.52■■□□□ 1.84
COL5A3P25940 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC26.52■■□□□ 1.84
COL5A3P25940 AC080038.3-201ENST00000623346 1952 ntBASIC26.52■■□□□ 1.84
COL5A3P25940 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
COL5A3P25940 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC26.52■■□□□ 1.84
COL5A3P25940 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC26.52■■□□□ 1.84
COL5A3P25940 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC26.52■■□□□ 1.84
COL5A3P25940 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
COL5A3P25940 RN7SL471P-201ENST00000580476 299 ntBASIC26.52■■□□□ 1.84
COL5A3P25940 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
COL5A3P25940 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
COL5A3P25940 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
COL5A3P25940 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL5A3P25940 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL5A3P25940 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
COL5A3P25940 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC26.51■■□□□ 1.83
COL5A3P25940 SPIB-206ENST00000596074 847 ntTSL 2 BASIC26.51■■□□□ 1.83
COL5A3P25940 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
COL5A3P25940 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC26.51■■□□□ 1.83
COL5A3P25940 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC26.51■■□□□ 1.83
COL5A3P25940 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL5A3P25940 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL5A3P25940 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL5A3P25940 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL5A3P25940 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL5A3P25940 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL5A3P25940 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC26.51■■□□□ 1.83
COL5A3P25940 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC26.51■■□□□ 1.83
COL5A3P25940 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
COL5A3P25940 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL5A3P25940 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
COL5A3P25940 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC26.5■■□□□ 1.83
COL5A3P25940 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
COL5A3P25940 STX5-203ENST00000394690 1568 ntTSL 5 BASIC26.5■■□□□ 1.83
COL5A3P25940 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC26.5■■□□□ 1.83
COL5A3P25940 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
COL5A3P25940 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
COL5A3P25940 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC26.5■■□□□ 1.83
COL5A3P25940 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC26.5■■□□□ 1.83
COL5A3P25940 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
COL5A3P25940 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC26.5■■□□□ 1.83
COL5A3P25940 SERF2-207ENST00000409614 582 ntTSL 2 BASIC26.5■■□□□ 1.83
COL5A3P25940 LINC01023-201ENST00000606054 436 ntBASIC26.5■■□□□ 1.83
COL5A3P25940 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
COL5A3P25940 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC26.49■■□□□ 1.83
COL5A3P25940 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
COL5A3P25940 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC26.49■■□□□ 1.83
COL5A3P25940 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC26.49■■□□□ 1.83
COL5A3P25940 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC26.49■■□□□ 1.83
COL5A3P25940 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
COL5A3P25940 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
COL5A3P25940 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL5A3P25940 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL5A3P25940 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC26.49■■□□□ 1.83
COL5A3P25940 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC26.49■■□□□ 1.83
COL5A3P25940 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC26.49■■□□□ 1.83
COL5A3P25940 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC26.49■■□□□ 1.83
COL5A3P25940 AC124016.1-201ENST00000609552 612 ntBASIC26.49■■□□□ 1.83
COL5A3P25940 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL5A3P25940 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL5A3P25940 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL5A3P25940 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC26.49■■□□□ 1.83
COL5A3P25940 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC26.48■■□□□ 1.83
COL5A3P25940 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
COL5A3P25940 MFF-205ENST00000354503 1085 ntTSL 2 BASIC26.48■■□□□ 1.83
COL5A3P25940 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
COL5A3P25940 DHDH-203ENST00000522614 776 ntTSL 5 BASIC26.48■■□□□ 1.83
COL5A3P25940 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC26.48■■□□□ 1.83
COL5A3P25940 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
COL5A3P25940 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
COL5A3P25940 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
COL5A3P25940 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
COL5A3P25940 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
COL5A3P25940 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
COL5A3P25940 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC26.48■■□□□ 1.83
COL5A3P25940 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC26.48■■□□□ 1.83
COL5A3P25940 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC26.48■■□□□ 1.83
COL5A3P25940 BX088651.1-201ENST00000540551 451 ntBASIC26.48■■□□□ 1.83
COL5A3P25940 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC26.48■■□□□ 1.83
COL5A3P25940 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC26.47■■□□□ 1.83
COL5A3P25940 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
COL5A3P25940 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
COL5A3P25940 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC26.47■■□□□ 1.83
COL5A3P25940 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC26.47■■□□□ 1.83
COL5A3P25940 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
COL5A3P25940 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms