Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC31.62■■■□□ 2.65
RAPGEF3O95398 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
RAPGEF3O95398 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
RAPGEF3O95398 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC31.62■■■□□ 2.65
RAPGEF3O95398 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
RAPGEF3O95398 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC31.62■■■□□ 2.65
RAPGEF3O95398 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC31.62■■■□□ 2.65
RAPGEF3O95398 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC31.62■■■□□ 2.65
RAPGEF3O95398 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC31.62■■■□□ 2.65
RAPGEF3O95398 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC31.62■■■□□ 2.65
RAPGEF3O95398 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
RAPGEF3O95398 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
RAPGEF3O95398 KRASP1-201ENST00000407852 552 ntBASIC31.61■■■□□ 2.65
RAPGEF3O95398 AC245052.3-201ENST00000450182 901 ntBASIC31.61■■■□□ 2.65
RAPGEF3O95398 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC31.61■■■□□ 2.65
RAPGEF3O95398 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
RAPGEF3O95398 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC31.61■■■□□ 2.65
RAPGEF3O95398 AL049597.2-201ENST00000565575 961 ntBASIC31.61■■■□□ 2.65
RAPGEF3O95398 WDR88-203ENST00000592765 651 ntTSL 5 BASIC31.61■■■□□ 2.65
RAPGEF3O95398 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC31.61■■■□□ 2.65
RAPGEF3O95398 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC31.61■■■□□ 2.65
RAPGEF3O95398 AC003102.1-202ENST00000563394 1796 ntBASIC31.61■■■□□ 2.65
RAPGEF3O95398 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC31.6■■■□□ 2.65
RAPGEF3O95398 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
RAPGEF3O95398 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC31.6■■■□□ 2.65
RAPGEF3O95398 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
RAPGEF3O95398 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC31.6■■■□□ 2.65
RAPGEF3O95398 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC31.6■■■□□ 2.65
RAPGEF3O95398 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
RAPGEF3O95398 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
RAPGEF3O95398 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RAPGEF3O95398 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC31.59■■■□□ 2.65
RAPGEF3O95398 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC31.59■■■□□ 2.65
RAPGEF3O95398 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RAPGEF3O95398 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
RAPGEF3O95398 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
RAPGEF3O95398 HES2-205ENST00000487437 968 ntTSL 3 BASIC31.59■■■□□ 2.65
RAPGEF3O95398 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC31.59■■■□□ 2.65
RAPGEF3O95398 AL590326.2-201ENST00000625139 305 ntBASIC31.59■■■□□ 2.65
RAPGEF3O95398 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC31.59■■■□□ 2.65
RAPGEF3O95398 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RAPGEF3O95398 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC31.59■■■□□ 2.65
RAPGEF3O95398 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RAPGEF3O95398 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
RAPGEF3O95398 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
RAPGEF3O95398 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC31.58■■■□□ 2.65
RAPGEF3O95398 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC31.58■■■□□ 2.65
RAPGEF3O95398 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC31.58■■■□□ 2.65
RAPGEF3O95398 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC31.58■■■□□ 2.65
RAPGEF3O95398 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC31.58■■■□□ 2.65
RAPGEF3O95398 TPM1-226ENST00000560959 925 ntTSL 2 BASIC31.58■■■□□ 2.65
RAPGEF3O95398 RARRES2P10-201ENST00000564312 460 ntBASIC31.58■■■□□ 2.65
RAPGEF3O95398 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC31.58■■■□□ 2.65
RAPGEF3O95398 CYP21A1P-202ENST00000354927 1481 ntBASIC31.58■■■□□ 2.65
RAPGEF3O95398 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC31.58■■■□□ 2.65
RAPGEF3O95398 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC31.57■■■□□ 2.64
RAPGEF3O95398 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC31.57■■■□□ 2.64
RAPGEF3O95398 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC31.57■■■□□ 2.64
RAPGEF3O95398 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
RAPGEF3O95398 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC31.57■■■□□ 2.64
RAPGEF3O95398 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
RAPGEF3O95398 SAPCD2P1-201ENST00000395413 1184 ntBASIC31.57■■■□□ 2.64
RAPGEF3O95398 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC31.57■■■□□ 2.64
RAPGEF3O95398 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC31.57■■■□□ 2.64
RAPGEF3O95398 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC31.57■■■□□ 2.64
RAPGEF3O95398 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC31.57■■■□□ 2.64
RAPGEF3O95398 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC31.56■■■□□ 2.64
RAPGEF3O95398 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
RAPGEF3O95398 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
RAPGEF3O95398 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC31.56■■■□□ 2.64
RAPGEF3O95398 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC31.56■■■□□ 2.64
RAPGEF3O95398 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC31.56■■■□□ 2.64
RAPGEF3O95398 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC31.56■■■□□ 2.64
RAPGEF3O95398 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC31.56■■■□□ 2.64
RAPGEF3O95398 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC31.56■■■□□ 2.64
RAPGEF3O95398 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC31.56■■■□□ 2.64
RAPGEF3O95398 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC31.56■■■□□ 2.64
RAPGEF3O95398 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
RAPGEF3O95398 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC31.56■■■□□ 2.64
RAPGEF3O95398 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
RAPGEF3O95398 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC31.56■■■□□ 2.64
RAPGEF3O95398 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
RAPGEF3O95398 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
RAPGEF3O95398 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC31.55■■■□□ 2.64
RAPGEF3O95398 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
RAPGEF3O95398 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC31.55■■■□□ 2.64
RAPGEF3O95398 AC120498.8-201ENST00000614275 531 ntBASIC31.55■■■□□ 2.64
RAPGEF3O95398 AC105020.6-201ENST00000621523 1217 ntBASIC31.55■■■□□ 2.64
RAPGEF3O95398 AC092865.7-201ENST00000641832 219 ntBASIC31.55■■■□□ 2.64
RAPGEF3O95398 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC31.55■■■□□ 2.64
RAPGEF3O95398 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
RAPGEF3O95398 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
RAPGEF3O95398 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC31.54■■■□□ 2.64
RAPGEF3O95398 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC31.54■■■□□ 2.64
RAPGEF3O95398 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
RAPGEF3O95398 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
RAPGEF3O95398 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
RAPGEF3O95398 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC31.53■■■□□ 2.64
RAPGEF3O95398 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC31.53■■■□□ 2.64
RAPGEF3O95398 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC31.53■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms