Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSSCA1O60232 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
SSSCA1O60232 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSSCA1O60232 AC112907.3-201ENST00000577781 2400 ntBASIC16.93■□□□□ 0.3
SSSCA1O60232 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSSCA1O60232 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSSCA1O60232 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC16.93■□□□□ 0.3
SSSCA1O60232 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
SSSCA1O60232 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSSCA1O60232 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
SSSCA1O60232 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC16.93■□□□□ 0.3
SSSCA1O60232 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSSCA1O60232 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
SSSCA1O60232 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSSCA1O60232 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSSCA1O60232 TSPY9P-201ENST00000440215 945 ntBASIC16.92■□□□□ 0.3
SSSCA1O60232 TSPY11P-201ENST00000442607 1045 ntBASIC16.92■□□□□ 0.3
SSSCA1O60232 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC16.92■□□□□ 0.3
SSSCA1O60232 AC121338.2-201ENST00000622535 1744 ntBASIC16.92■□□□□ 0.3
SSSCA1O60232 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
SSSCA1O60232 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSSCA1O60232 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSSCA1O60232 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSSCA1O60232 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC16.92■□□□□ 0.3
SSSCA1O60232 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSSCA1O60232 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSSCA1O60232 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.92■□□□□ 0.3
SSSCA1O60232 AC087289.5-201ENST00000586076 3175 ntBASIC16.91■□□□□ 0.3
SSSCA1O60232 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSSCA1O60232 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSSCA1O60232 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
SSSCA1O60232 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSSCA1O60232 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SSSCA1O60232 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSSCA1O60232 LSM4-201ENST00000252816 986 ntTSL 2 BASIC16.91■□□□□ 0.3
SSSCA1O60232 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC16.91■□□□□ 0.3
SSSCA1O60232 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSSCA1O60232 OR2I1P-207ENST00000453522 948 ntBASIC16.91■□□□□ 0.3
SSSCA1O60232 MIR4787-201ENST00000607364 84 ntBASIC16.91■□□□□ 0.3
SSSCA1O60232 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.91■□□□□ 0.3
SSSCA1O60232 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC16.91■□□□□ 0.3
SSSCA1O60232 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
SSSCA1O60232 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
SSSCA1O60232 AC007225.1-201ENST00000566331 1836 ntBASIC16.91■□□□□ 0.3
SSSCA1O60232 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSSCA1O60232 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSSCA1O60232 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
SSSCA1O60232 AIRN-201ENST00000601203 4374 ntBASIC16.91■□□□□ 0.3
SSSCA1O60232 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC16.9■□□□□ 0.3
SSSCA1O60232 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC16.9■□□□□ 0.3
SSSCA1O60232 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSSCA1O60232 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
SSSCA1O60232 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
SSSCA1O60232 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC16.9■□□□□ 0.3
SSSCA1O60232 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSSCA1O60232 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC16.9■□□□□ 0.3
SSSCA1O60232 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSSCA1O60232 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSSCA1O60232 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC16.9■□□□□ 0.3
SSSCA1O60232 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSSCA1O60232 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSSCA1O60232 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSSCA1O60232 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC16.9■□□□□ 0.3
SSSCA1O60232 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC16.9■□□□□ 0.3
SSSCA1O60232 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSSCA1O60232 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC16.9■□□□□ 0.3
SSSCA1O60232 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SSSCA1O60232 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSSCA1O60232 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SSSCA1O60232 BID-204ENST00000399767 2129 ntTSL 2 BASIC16.9■□□□□ 0.3
SSSCA1O60232 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSSCA1O60232 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SSSCA1O60232 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC16.89■□□□□ 0.29
SSSCA1O60232 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSSCA1O60232 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
SSSCA1O60232 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSSCA1O60232 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSSCA1O60232 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSSCA1O60232 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSSCA1O60232 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SSSCA1O60232 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC16.89■□□□□ 0.29
SSSCA1O60232 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSSCA1O60232 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSSCA1O60232 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SSSCA1O60232 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSSCA1O60232 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
SSSCA1O60232 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC16.89■□□□□ 0.29
SSSCA1O60232 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSSCA1O60232 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SSSCA1O60232 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSSCA1O60232 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSSCA1O60232 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
SSSCA1O60232 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSSCA1O60232 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
SSSCA1O60232 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSSCA1O60232 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.88■□□□□ 0.29
SSSCA1O60232 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SSSCA1O60232 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.88■□□□□ 0.29
SSSCA1O60232 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC16.88■□□□□ 0.29
SSSCA1O60232 NARF-205ENST00000412079 1760 ntTSL 5 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms